PDB entry 3l1z
View 3l1z on RCSB PDB site
Description: Crystal structure of the U-BOX domain of human E4B ubiquitin ligase in complex with UBCH5C E2 ubiquitin conjugating enzyme
Class: ligase
Keywords: e4b, ufd2a, ubch5c, u-box ubiquitin ligase, e2 ubiquitin conjugating enzyme, ubl conjugation pathway, ligase
Deposited on
2009-12-14, released
2010-05-05
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-12-28, with a file datestamp of
2011-12-23.
Experiment type: XRAY
Resolution: 3.17 Å
R-factor: 0.236
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin-conjugating enzyme E2 D3
Species: Homo sapiens [TaxId:9606]
Gene: UBE2D3, UBCH5C
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3l1za1, d3l1za2 - Chain 'B':
Compound: Ubiquitin conjugation factor E4 B
Species: Homo sapiens [TaxId:9606]
Gene: UBE4B, HDNB1, KIAA0684, UFD2
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3l1zA (A:)
mhhhhhhmnsmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvf
fltihfptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsll
cdpnpddplvpeiariyktdrdkynrisrewtqkyam
Sequence, based on observed residues (ATOM records): (download)
>3l1zA (A:)
hhmnsmalkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffltih
fptdypfkppkvafttriyhpninsngsicldilrsqwspaltiskvllsicsllcdpnp
ddplvpeiariyktdrdkynrisrewtqkyam
- Chain 'B':
No sequence available.