PDB entry 3kvy

View 3kvy on RCSB PDB site
Description: Trapping of an oxocarbenium ion intermediate in UP crystals
Class: transferase
Keywords: Oxocarbenium Ion, Glycal, Pyrimidine Salvage, Uridine Phosphorylase, TRANSFERASE
Deposited on 2009-11-30, released 2010-04-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Bos taurus [TaxId:9913]
    Gene: UPP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3kvya_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Bos taurus [TaxId:9913]
    Gene: UPP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3kvyb_
  • Heterogens: SO4, URA, R2B, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3kvyA (A:)
mastaaetekpedhndlvqlcnphiaamkedilyhfslststhdfpamfgdvkfvcvggs
psrmkafikyvamelgfahpgadypnicegtdryamfkvgpvlsvshgmgvpsiaimlhe
likllyhahcsgvtlirigtsggiglepgsvvitrqavdpcfkpefeqivlgkrevrntd
ldeqlvqelarcsaelgefptvvgntmctldfyegqgrldgalcsytekdkqdylraaya
agirniemeasvfaamcnacglraavvcvtllnrlegdqissphdvlaeyqqrpqrlvgq
fikkrlmqa

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvyA (A:)
dlvqlcnphiaamkedilyhfslststhdfpamfgdvkfvcvggspsrmkafikyvamel
gfaadypnicegtdryamfkvgpvlsvshgmgvpsiaimlhelikllyhahcsgvtliri
gtsggiglepgsvvitrqavdpcfkpefeqivlgkrevrntdldeqlvqelarcsaelge
fptvvgntmctldfyegqgrldgalcsytekdkqdylraayaagirniemeasvfaamcn
acglraavvcvtllnrlegdqissphdvlaeyqqrpqrlvgqfikkrlmq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3kvyB (B:)
mastaaetekpedhndlvqlcnphiaamkedilyhfslststhdfpamfgdvkfvcvggs
psrmkafikyvamelgfahpgadypnicegtdryamfkvgpvlsvshgmgvpsiaimlhe
likllyhahcsgvtlirigtsggiglepgsvvitrqavdpcfkpefeqivlgkrevrntd
ldeqlvqelarcsaelgefptvvgntmctldfyegqgrldgalcsytekdkqdylraaya
agirniemeasvfaamcnacglraavvcvtllnrlegdqissphdvlaeyqqrpqrlvgq
fikkrlmqa

    Sequence, based on observed residues (ATOM records): (download) 
    >3kvyB (B:)
hndlvqlcnphiaamkedilyhfslststhdfpamfgdvkfvcvggspsrmkafikyvam
elgfahadypnicegtdryamfkvgpvlsvshgmgvpsiaimlhelikllyhahcsgvtl
irigtsggiglepgsvvitrqavdpcfkpefeqivlgkrevrntdldeqlvqelarcsae
lgefptvvgntmctldfyegqgrldgalcsytekdkqdylraayaagirniemeasvfaa
mcnacglraavvcvtllnrlegdqissphdvlaeyqqrpqrlvgqfikkrlmq