PDB entry 3kti

View 3kti on RCSB PDB site
Description: Structure of ClpP in complex with ADEP1
Class: hydrolase/antibiotic
Keywords: hydrolase, Protease, Serine protease, Stress response, A54556A, enopeptin, depsipeptide, antibiotics, HYDROLASE-ANTIBIOTIC complex
Deposited on 2009-11-25, released 2010-03-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-11-10, with a file datestamp of 2010-11-05.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.217
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ktia_
  • Chain 'B':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ktib_
  • Chain 'C':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ktic_
  • Chain 'D':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ktid_
  • Chain 'E':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ktie_
  • Chain 'F':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ktif_
  • Chain 'G':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ktig_
  • Chain 'H':
    Compound: Acyldepsipeptide 1
    Species: Streptococcus hawaiiensis
    Database cross-references and differences (RAF-indexed):
    • NOR NOR01131 (0-6)
  • Chain 'I':
    Compound: Acyldepsipeptide 1
    Species: Streptococcus hawaiiensis
    Database cross-references and differences (RAF-indexed):
    • NOR NOR01131 (0-6)
  • Chain 'J':
    Compound: Acyldepsipeptide 1
    Species: Streptococcus hawaiiensis
    Database cross-references and differences (RAF-indexed):
    • NOR NOR01131 (0-6)
  • Chain 'K':
    Compound: Acyldepsipeptide 1
    Species: Streptococcus hawaiiensis
    Database cross-references and differences (RAF-indexed):
    • NOR NOR01131 (0-6)
  • Chain 'L':
    Compound: Acyldepsipeptide 1
    Species: Streptococcus hawaiiensis
    Database cross-references and differences (RAF-indexed):
    • NOR NOR01131 (0-6)
  • Chain 'M':
    Compound: Acyldepsipeptide 1
    Species: Streptococcus hawaiiensis
    Database cross-references and differences (RAF-indexed):
    • NOR NOR01131 (0-6)
  • Chain 'N':
    Compound: Acyldepsipeptide 1
    Species: Streptococcus hawaiiensis
    Database cross-references and differences (RAF-indexed):
    • NOR NOR01131 (0-6)
  • Heterogens: DMS, NHE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ktiA (A:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthtedkkhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ktiA (A:)
diysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsitagmaiy
dtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqateiei
aakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ktiB (B:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthtedkkhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ktiB (B:)
diysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsitagmaiy
dtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqateiei
aakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ktiC (C:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthtedkkhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ktiC (C:)
diysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsitagmaiy
dtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqateiei
aakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ktiD (D:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthtedkkhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ktiD (D:)
diysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsitagmaiy
dtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqateiei
aakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3ktiE (E:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthtedkkhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ktiE (E:)
diysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsitagmaiy
dtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqateiei
aakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3ktiF (F:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthtedkkhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ktiF (F:)
diysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsitagmaiy
dtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqateiei
aakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3ktiG (G:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthtedkkhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ktiG (G:)
diysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsitagmaiy
dtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqateiei
aakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.