PDB entry 3kmq

View 3kmq on RCSB PDB site
Description: G62S mutant of foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, tetragonal structure
Class: transferase/RNA
Keywords: 3d, polymerase, rna dependent rna polymerase, ribavirin, foot-and-mouth disease virus, TRANSFERASE-RNA complex
Deposited on 2009-11-11, released 2010-07-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-07-07, with a file datestamp of 2010-07-02.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: 0.241
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3D polymerase
    Species: Foot-and-mouth disease virus - type C [TaxId:12116]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9QCE3 (0-469)
      • engineered mutation (61)
      • expression tag (470-475)
    Domains in SCOPe 2.08: d3kmqa1, d3kmqa2
  • Chain 'B':
    Compound: RNA (5'-r(p*gp*gp*gp*cp*c)-3')
  • Chain 'C':
    Compound: RNA (5'-r(*gp*gp*cp*cp*c)-3')
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3kmqA (A:)
glivdtrdveervhvmrktklaptvahgvfnpefgpaalsnkdprlnegvvldevifskh
ksdtkmsaedkalfrrcaadyasrlhsvlgtanaplsiyeaikgvdgldamepdtapglp
walqgkrrgalidfengtvgpeveaalklmekreykfacqtflkdeirpmekvragktri
vdvlpvehilytrmmigrfcaqmhsnngpqigsavgcnpdvdwqrfgthfaqyrnvwdvd
ysafdanhcsdamnimfeevfrtefgfhpnaewilktlvntehayenkritveggmpsgc
satsiintilnniyvlyalrrhyegveldtytmisygddivvasdydldfealkphfksl
gqtitpadksdkgfvlghsitdvtflkrhfhmdygtgfykpvmasktleailsfarrgti
qeklisvaglavhsgpdeyrrlfepfqglfeipsyrslylrwvnavcgdaaalehh

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.