PDB entry 3k8z

View 3k8z on RCSB PDB site
Description: Crystal Structure of Gudb1 a decryptified secondary glutamate dehydrogenase from B. subtilis
Class: oxidoreductase
Keywords: GudB, Glutamate dehydrogenase, NAD, Oxidoreductase
Deposited on 2009-10-15, released 2010-06-02
The last revision prior to the SCOPe 2.03 freeze date was dated 2010-06-23, with a file datestamp of 2010-06-18.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.249
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nad-specific glutamate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3k8za1, d3k8za2
  • Chain 'B':
    Compound: nad-specific glutamate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3k8zb1, d3k8zb2
  • Chain 'C':
    Compound: nad-specific glutamate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3k8zc1, d3k8zc2
  • Chain 'D':
    Compound: nad-specific glutamate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3k8zd1, d3k8zd2
  • Chain 'E':
    Compound: nad-specific glutamate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3k8ze1, d3k8ze2
  • Chain 'F':
    Compound: nad-specific glutamate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3k8zf1, d3k8zf2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3k8zA (A:)
maadrntghteedkldvlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddg
svkiftgyrahndsvgptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivc
dprdmsfrelerlsrgyvraisqivgptkdvpapdvftnsqimawmmdeysridefnspg
fitgkplvlggshgresatakgvticikeaakkrgidikgarvvvqgfgnagsylakfmh
dagakvvgisdaygglydpegldidylldrrdsfgtvtklfndtitnqelleldcdilvp
aaienqiteenahnirakivveaangpttlegtkilsdrdillvpdvlasaggvtvsyfe
wvqnnqgfywseeeveeklekmmvksfnniyemannrridmrlaaymvgvrkmaeasrfr
gwi

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8zA (A:)
vlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddgsvkiftgyrahndsvg
ptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivcdprdmsfrelerlsrg
yvraisqivgptkdvpapdvftnsqimawmmdeysridefnspgfitgkplvlggshgre
satakgvticikeaakkrgidikgarvvvqgfgnagsylakfmhdagakvvgisdayggl
ydpegldidcdilvpaaienqiteenahnirakivveaangpttlegtkilsdrdillvp
dvlasaggvtvsyfewvqnnqgfywseeeveeklekmmvksfnniyemannrridmrlaa
ymvgvrkmaeasrfrgwi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3k8zB (B:)
maadrntghteedkldvlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddg
svkiftgyrahndsvgptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivc
dprdmsfrelerlsrgyvraisqivgptkdvpapdvftnsqimawmmdeysridefnspg
fitgkplvlggshgresatakgvticikeaakkrgidikgarvvvqgfgnagsylakfmh
dagakvvgisdaygglydpegldidylldrrdsfgtvtklfndtitnqelleldcdilvp
aaienqiteenahnirakivveaangpttlegtkilsdrdillvpdvlasaggvtvsyfe
wvqnnqgfywseeeveeklekmmvksfnniyemannrridmrlaaymvgvrkmaeasrfr
gwi

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8zB (B:)
vlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddgsvkiftgyrahndsvg
ptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivcdprdmsfrelerlsrg
yvraisqivgptkdvpapdvftnsqimawmmdeysridefnspgfitgkplvlggshgre
satakgvticikeaakkrgidikgarvvvqgfgnagsylakfmhdagakvvgisdayggl
ydpegldidylldrtnqelleldcdilvpaaienqiteenahnirakivveaangpttle
gtkilsdrdillvpdvlasaggvtvsyfewvqnnqgfywseeeveeklekmmvksfnniy
emannrridmrlaaymvgvrkmaeasrfrgwi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3k8zC (C:)
maadrntghteedkldvlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddg
svkiftgyrahndsvgptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivc
dprdmsfrelerlsrgyvraisqivgptkdvpapdvftnsqimawmmdeysridefnspg
fitgkplvlggshgresatakgvticikeaakkrgidikgarvvvqgfgnagsylakfmh
dagakvvgisdaygglydpegldidylldrrdsfgtvtklfndtitnqelleldcdilvp
aaienqiteenahnirakivveaangpttlegtkilsdrdillvpdvlasaggvtvsyfe
wvqnnqgfywseeeveeklekmmvksfnniyemannrridmrlaaymvgvrkmaeasrfr
gwi

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8zC (C:)
vlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddgsvkiftgyrahndsvg
ptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivcdprdmsfrelerlsrg
yvraisqivgptkdvpapdvftnsqimawmmdeysridefnspgfitgkplvlggshgre
satakgvticikeaakkrgidikgarvvvqgfgnagsylakfmhdagakvvgisdayggl
ydpegldidylldrrdsfgtvtklfndtitnqelleldcdilvpaaienqiteenahnir
akivveaangpttlegtkilsdrdillvpdvlasaggvtvsyfewvqnnqgfywseeeve
eklekmmvksfnniyemannrridmrlaaymvgvrkmaeasrfrgwi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3k8zD (D:)
maadrntghteedkldvlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddg
svkiftgyrahndsvgptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivc
dprdmsfrelerlsrgyvraisqivgptkdvpapdvftnsqimawmmdeysridefnspg
fitgkplvlggshgresatakgvticikeaakkrgidikgarvvvqgfgnagsylakfmh
dagakvvgisdaygglydpegldidylldrrdsfgtvtklfndtitnqelleldcdilvp
aaienqiteenahnirakivveaangpttlegtkilsdrdillvpdvlasaggvtvsyfe
wvqnnqgfywseeeveeklekmmvksfnniyemannrridmrlaaymvgvrkmaeasrfr
gwi

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8zD (D:)
vlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddgsvkiftgyrahndsvg
ptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivcdprdmsfrelerlsrg
yvraisqivgptkdvpapdvftnsqimawmmdeysridefnspgfitgkplvlggshgre
satakgvticikeaakkrgidikgarvvvqgfgnagsylakfmhdagakvvgisdayggl
ydpegldidcdilvpaaienqiteenahnirakivveaangpttlegtkilsdrdillvp
dvlasaggvtvsyfewvqnnqgfywseeeveeklekmmvksfnniyemannrridmrlaa
ymvgvrkmaeasrfrgwi

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3k8zE (E:)
maadrntghteedkldvlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddg
svkiftgyrahndsvgptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivc
dprdmsfrelerlsrgyvraisqivgptkdvpapdvftnsqimawmmdeysridefnspg
fitgkplvlggshgresatakgvticikeaakkrgidikgarvvvqgfgnagsylakfmh
dagakvvgisdaygglydpegldidylldrrdsfgtvtklfndtitnqelleldcdilvp
aaienqiteenahnirakivveaangpttlegtkilsdrdillvpdvlasaggvtvsyfe
wvqnnqgfywseeeveeklekmmvksfnniyemannrridmrlaaymvgvrkmaeasrfr
gwi

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8zE (E:)
vlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddgsvkiftgyrahndsvg
ptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivcdprdmsfrelerlsrg
yvraisqivgptkdvpapdvftnsqimawmmdeysridefnspgfitgkplvlggshgre
satakgvticikeaakkrgidikgarvvvqgfgnagsylakfmhdagakvvgisdayggl
ydpegldidylldrtnqelleldcdilvpaaienqiteenahnirakivveaangpttle
gtkilsdrdillvpdvlasaggvtvsyfewvqnnqgfywseeeveeklekmmvksfnniy
emannrridmrlaaymvgvrkmaeasrfrgwi

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3k8zF (F:)
maadrntghteedkldvlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddg
svkiftgyrahndsvgptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivc
dprdmsfrelerlsrgyvraisqivgptkdvpapdvftnsqimawmmdeysridefnspg
fitgkplvlggshgresatakgvticikeaakkrgidikgarvvvqgfgnagsylakfmh
dagakvvgisdaygglydpegldidylldrrdsfgtvtklfndtitnqelleldcdilvp
aaienqiteenahnirakivveaangpttlegtkilsdrdillvpdvlasaggvtvsyfe
wvqnnqgfywseeeveeklekmmvksfnniyemannrridmrlaaymvgvrkmaeasrfr
gwi

    Sequence, based on observed residues (ATOM records): (download) 
    >3k8zF (F:)
vlkstqtvihkaleklgypeevyellkepmrlltvkipvrmddgsvkiftgyrahndsvg
ptkggirfhpnvtekevkalsiwmslkcgiidlpygggkggivcdprdmsfrelerlsrg
yvraisqivgptkdvpapdvftnsqimawmmdeysridefnspgfitgkplvlggshgre
satakgvticikeaakkrgidikgarvvvqgfgnagsylakfmhdagakvvgisdayggl
ydpegldidylldrrdsfgtvtklfndtitnqelleldcdilvpaaienqiteenahnir
akivveaangpttlegtkilsdrdillvpdvlasaggvtvsyfewvqnnqgfywseeeve
eklekmmvksfnniyemannrridmrlaaymvgvrkmaeasrfrgwi