PDB entry 3k1k
View 3k1k on RCSB PDB site
Description: Green fluorescent protein bound to minimizer nanobody
Class: luminescent protein/immune system
Keywords: nanobody, ANTIBODY-COMPLEX, CHROMOPHORE, LUMINESCENCE, PHOTOPROTEIN, LUMINESCENT PROTEIN-IMMUNE SYSTEM COMPLEX
Deposited on
2009-09-28, released
2009-12-08
The last revision prior to the SCOPe 2.06 freeze date was dated
2013-09-18, with a file datestamp of
2013-09-13.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.215
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Green fluorescent protein
Species: Aequorea victoria [TaxId:6100]
Gene: GFP
Database cross-references and differences (RAF-indexed):
- Uniprot P42212
- chromophore (65)
- engineered (79)
- engineered (98)
- engineered (152)
- engineered (162)
Domains in SCOPe 2.06: d3k1ka_ - Chain 'B':
Compound: Green fluorescent protein
Species: Aequorea victoria [TaxId:6100]
Gene: GFP
Database cross-references and differences (RAF-indexed):
- Uniprot P42212
- chromophore (65)
- engineered (79)
- engineered (98)
- engineered (152)
- engineered (162)
Domains in SCOPe 2.06: d3k1kb_ - Chain 'C':
Compound: Enhancer
Species: Camelus dromedarius [TaxId:9838]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3k1kc_ - Chain 'D':
Compound: Enhancer
Species: Camelus dromedarius [TaxId:9838]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3k1kd1, d3k1kd2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3k1kA (A:)
mgkgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
vttfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlv
nrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqlad
hyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagithgmdelyk
Sequence, based on observed residues (ATOM records): (download)
>3k1kA (A:)
kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
tfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlvnr
ielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqladhy
qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3k1kB (B:)
mgkgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
vttfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlv
nrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqlad
hyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagithgmdelyk
Sequence, based on observed residues (ATOM records): (download)
>3k1kB (B:)
kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
tfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlvnr
ielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqladhy
qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3k1kC (C:)
maqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrs
syedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsshhh
hhh
Sequence, based on observed residues (ATOM records): (download)
>3k1kC (C:)
qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvs
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3k1kD (D:)
maqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrs
syedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsshhh
hhh
Sequence, based on observed residues (ATOM records): (download)
>3k1kD (D:)
qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvss