PDB entry 3k1k

View 3k1k on RCSB PDB site
Description: Green fluorescent protein bound to enhancer nanobody
Class: luminescent protein/immune system
Keywords: nanobody, ANTIBODY-COMPLEX, CHROMOPHORE, LUMINESCENCE, PHOTOPROTEIN, LUMINESCENT PROTEIN-IMMUNE SYSTEM COMPLEX
Deposited on 2009-09-28, released 2009-12-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-01-25, with a file datestamp of 2017-01-20.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • chromophore (65)
      • engineered (79)
      • engineered (98)
      • engineered (152)
      • engineered (162)
    Domains in SCOPe 2.07: d3k1ka_
  • Chain 'B':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • chromophore (65)
      • engineered (79)
      • engineered (98)
      • engineered (152)
      • engineered (162)
    Domains in SCOPe 2.07: d3k1kb_
  • Chain 'C':
    Compound: Enhancer
    Species: Camelus dromedarius [TaxId:9838]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 3K1K
    Domains in SCOPe 2.07: d3k1kc1, d3k1kc2
  • Chain 'D':
    Compound: Enhancer
    Species: Camelus dromedarius [TaxId:9838]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 3K1K
    Domains in SCOPe 2.07: d3k1kd1, d3k1kd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3k1kA (A:)
    mgkgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
    vttfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlv
    nrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqlad
    hyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagithgmdelyk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3k1kA (A:)
    kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
    tfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlvnr
    ielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqladhy
    qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3k1kB (B:)
    mgkgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
    vttfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlv
    nrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqlad
    hyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagithgmdelyk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3k1kB (B:)
    kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
    tfsygvqcfsrypdhmkrhdffksampegyvqertisfkddgnyktraevkfegdtlvnr
    ielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedgsvqladhy
    qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3k1kC (C:)
    maqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrs
    syedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsshhh
    hhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3k1kC (C:)
    qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
    edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvs
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3k1kD (D:)
    maqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrs
    syedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsshhh
    hhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3k1kD (D:)
    qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
    edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvss