PDB entry 3jwd
View 3jwd on RCSB PDB site
Description: Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
Class: viral protein
Keywords: hiv-1 viral spike, molecular motion, protein architecture, receptor-triggered entry, type 1 fusion protein, cell membrane, disulfide bond, glycoprotein, host-virus interaction, immune response, viral protein
Deposited on
2009-09-18, released
2009-12-29
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: 0.201
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hiv-1 gp120 envelope glycoprotein
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: hiv-1 gp120 envelope glycoprotein
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: T-cell surface glycoprotein cd4
Species: Homo sapiens [TaxId:9606]
Gene: CD4
Database cross-references and differences (RAF-indexed):
- Uniprot P01730 (1-183)
- initiating methionine (0)
Domains in SCOPe 2.04: d3jwdc1, d3jwdc2 - Chain 'D':
Compound: T-cell surface glycoprotein cd4
Species: Homo sapiens [TaxId:9606]
Gene: CD4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3jwdd1, d3jwdd2 - Chain 'H':
Compound: Fab 48d heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Fab 48d light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3jwdl1, d3jwdl2 - Chain 'O':
Compound: Fab 48d light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3jwdo1, d3jwdo2 - Chain 'P':
Compound: Fab 48d heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3jwdC (C:)
mkkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrr
slwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltle
sppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlaf
qkas
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3jwdD (D:)
mkkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrr
slwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltle
sppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlaf
qkas
Sequence, based on observed residues (ATOM records): (download)
>3jwdD (D:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
kas
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>3jwdL (L:)
diqmtqspssvsasvgdrvtitcrasqdistwlawyqqkpgkapklliyaastlqsgvps
rfsgsgsgtdfsltinslqpedfatyycqqansfftfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhklyacevthqglsspvtksfnrgec
- Chain 'O':
Sequence, based on SEQRES records: (download)
>3jwdO (O:)
diqmtqspssvsasvgdrvtitcrasqdistwlawyqqkpgkapklliyaastlqsgvps
rfsgsgsgtdfsltinslqpedfatyycqqansfftfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhklyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3jwdO (O:)
diqmtqspssvsasvgdrvtitcrasqdistwlawyqqkpgkapklliyaastlqsgvps
rfsgsgsgtdfsltinslqpedfatyycqqansfftfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhklyacevthqglsspvtksfnrge
- Chain 'P':
No sequence available.