PDB entry 3jw0
View 3jw0 on RCSB PDB site
Description: E2~Ubiquitin-HECT
Class: ligase/signaling protein
Keywords: Ubiquitin, HECT, E3, Ubiquitin ligase, UbcH5B, NEDD4L, NEDD4-2, Ligase, Ubl conjugation pathway, Isopeptide bond, Nucleus, Host-virus interaction, LIGASE-SIGNALING PROTEIN complex
Deposited on
2009-09-17, released
2010-01-12
The last revision prior to the SCOPe 2.08 freeze date was dated
2012-03-21, with a file datestamp of
2012-03-16.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.252
AEROSPACI score: 0.18
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ubiquitin-conjugating enzyme e2 d2
Species: Homo sapiens [TaxId:9606]
Gene: UBE2D2, UBC4, UBCH5B
Database cross-references and differences (RAF-indexed):
- Uniprot P62837 (0-145)
- engineered (1)
- engineered (83)
- engineered (96)
Domains in SCOPe 2.08: d3jw0a_ - Chain 'B':
Compound: ubiquitin-conjugating enzyme e2 d2
Species: Homo sapiens [TaxId:9606]
Gene: UBE2D2, UBC4, UBCH5B
Database cross-references and differences (RAF-indexed):
- Uniprot P62837 (0-145)
- engineered (1)
- engineered (83)
- engineered (96)
Domains in SCOPe 2.08: d3jw0b_ - Chain 'C':
Compound: E3 ubiquitin-protein ligase NEDD4-like
Species: Homo sapiens [TaxId:9606]
Gene: NEDD4L, KIAA0439, NEDL3
Database cross-references and differences (RAF-indexed):
- Uniprot Q96PU5 (5-End)
- expression tag (4)
- engineered (351)
Domains in SCOPe 2.08: d3jw0c1, d3jw0c2 - Chain 'D':
Compound: E3 ubiquitin-protein ligase NEDD4-like
Species: Homo sapiens [TaxId:9606]
Gene: NEDD4L, KIAA0439, NEDL3
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3jw0d_ - Chain 'X':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: RPS27A, UBA80, UBCEP1, UBA52, UBCEP2, UBB, UBC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3jw0x_ - Chain 'Y':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: RPS27A, UBA80, UBCEP1, UBA52, UBCEP2, UBB, UBC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3jw0y_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3jw0A (A:)
askrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdyp
fkppkvafttriyhpninsngsisldilrsqwspalkiskvllsicsllcdpnpddplvp
eiariyktdrekynriarewtqkyam
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3jw0B (B:)
askrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdyp
fkppkvafttriyhpninsngsisldilrsqwspalkiskvllsicsllcdpnpddplvp
eiariyktdrekynriarewtqkyam
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3jw0C (C:)
gspefefkqkydyfrkklkkpadipnrfemklhrnnifeesyrrimsvkrpdvlkarlwi
efesekgldyggvarewffllskemfnpyyglfeysatdnytlqinpnsglcnedhlsyf
tfigrvaglavfhgklldgffirpfykmmlgkqitlndmesvdseyynslkwilendpte
ldlmfcideenfgqtyqvdlkpngseimvtnenkreyidlviqwrfvnrvqkqmnafleg
ftellpidlikifdenelellmcglgdvdvndwrqhsiykngycpnhpviqwfwkavllm
daekrirllqfvtgtsrvpmngfaelygsngpqlftieqwgspeklprahtsfnrldlpp
yetfedlrekllmavenaqgfegvd
Sequence, based on observed residues (ATOM records): (download)
>3jw0C (C:)
fefkqkydyfrkklkkpadipnrfemklhrnnifeesyrrimsvkrpdvlkarlwiefes
ekgldyggvarewffllskemfnpyyglfeysatdnytlqinpnsglcnedhlsyftfig
rvaglavfhgklldgffirpfykmmlgkqitlndmesvdseyynslkwilendpteldlm
fcideenfgqtyqvdlkpngseimvtnenkreyidlviqwrfvnrvqkqmnaflegftel
lpidlikifdenelellmcglgdvdvndwrqhsiykngycpnhpviqwfwkavllmdaek
rirllqfvtgtsrvpmngfaelygsngpqlftieqwgspeklprahtsfnrldlppyetf
edlrekllmavenaqg
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3jw0D (D:)
gspefefkqkydyfrkklkkpadipnrfemklhrnnifeesyrrimsvkrpdvlkarlwi
efesekgldyggvarewffllskemfnpyyglfeysatdnytlqinpnsglcnedhlsyf
tfigrvaglavfhgklldgffirpfykmmlgkqitlndmesvdseyynslkwilendpte
ldlmfcideenfgqtyqvdlkpngseimvtnenkreyidlviqwrfvnrvqkqmnafleg
ftellpidlikifdenelellmcglgdvdvndwrqhsiykngycpnhpviqwfwkavllm
daekrirllqfvtgtsrvpmngfaelygsngpqlftieqwgspeklprahtsfnrldlpp
yetfedlrekllmavenaqgfegvd
Sequence, based on observed residues (ATOM records): (download)
>3jw0D (D:)
efkqkydyfrkklkkpadipnrfemklhrnnifeesyrrimsvkrpdvlkarlwiefese
kgldyggvarewffllskemfnpyyglfeysatdnytlqinpnsglcnedhlsyftfigr
vaglavfhgklldgffirpfykmmlgkqitlndmesvdseyynslkwilendpteldlmf
cideenfgqtyqvdlkpngseimvtnenkreyidlviqwrfvnrvqkqmnaflegftell
pidlikifdenelellmcglgdvdvndwrqhsiykngycpnhpviqwfwkavllmdaekr
irllqfvtgtsrvpmngfaelygsngpqlftieqwgspeklprahtsfnrldlppyetfe
dlrekllmavenaq
- Chain 'X':
Sequence, based on SEQRES records: (download)
>3jw0X (X:)
gsggsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrt
lsdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>3jw0X (X:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg
- Chain 'Y':
Sequence, based on SEQRES records: (download)
>3jw0Y (Y:)
gsggsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrt
lsdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>3jw0Y (Y:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg