PDB entry 3jvg

View 3jvg on RCSB PDB site
Description: Crystal Structure of chicken CD1-1
Class: immune system
Keywords: cd1, T-Cell, lipid, antigen, Transmembrane, Disulfide bond, Immune response, Immunoglobulin domain, MHC I, Polymorphism, Secreted, IMMUNE SYSTEM
Deposited on 2009-09-16, released 2010-02-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2010-03-02, with a file datestamp of 2010-02-26.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.218
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein CD1A1 antigen
    Species: Gallus gallus [TaxId:9031]
    Gene: CD1A1, chicken cd1.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5HUM9 (Start-274)
      • expression tag (275)
    Domains in SCOPe 2.07: d3jvga1, d3jvga2, d3jvga3
  • Chain 'B':
    Compound: T-cell surface glycoprotein CD1A1 antigen
    Species: Gallus gallus [TaxId:9031]
    Gene: CD1A1, chicken cd1.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5HUM9 (Start-274)
      • expression tag (275)
    Domains in SCOPe 2.07: d3jvgb1, d3jvgb2, d3jvgb3
  • Chain 'C':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Gene: B2M, beta-2-microglobulin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jvgc_
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Gene: B2M, beta-2-microglobulin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3jvgd_
  • Heterogens: UNL, CL, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3jvgA (A:)
    epegshmlkllhfatfqnstsvlvgglgllgdvkmgsldsrtgniryyrpwlrpslpkgd
    wdviessiksyvrdfsrlvqmyttvpypfvfqssigcelqsngtirtffdiayegqnflr
    fnldagtwdqmqhnqlsakaehlmanastlneviqvllndtcvdilrlfiqagkadlerq
    vppmavvfartagqaqlllvcrvtsfyprpiavtwlrdgrevppspalstgtvlpnadlt
    yqlrstllvspqdghgyacrvqhcslgdrsllvpwhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3jvgA (A:)
    shmlkllhfatfqnstsvlvgglgllgdvkmgsldsrtgniryyrpwlrpslpkgdwdvi
    essiksyvrdfsrlvqmytvpypfvfqssigcelqsngtirtffdiayegqnflrfnlda
    gtwdqmqhnqlsakaehlmanastlneviqvllndtcvdilrlfiqagkadlerqvppma
    vvfartaqlllvcrvtsfyprpiavtwlrdgrevppspalstgtvlpnadltyqlrstll
    vsphgyacrvqhcslgrsllvpwh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3jvgB (B:)
    epegshmlkllhfatfqnstsvlvgglgllgdvkmgsldsrtgniryyrpwlrpslpkgd
    wdviessiksyvrdfsrlvqmyttvpypfvfqssigcelqsngtirtffdiayegqnflr
    fnldagtwdqmqhnqlsakaehlmanastlneviqvllndtcvdilrlfiqagkadlerq
    vppmavvfartagqaqlllvcrvtsfyprpiavtwlrdgrevppspalstgtvlpnadlt
    yqlrstllvspqdghgyacrvqhcslgdrsllvpwhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3jvgB (B:)
    shmlkllhfatfqnstsvlvgglgllgdvkmgsldsrtgniryyrpwlrpslpkgdwdvi
    essiksyvrdfsrlvqmytvpypfvfqssigcelqsngtirtffdiayegqnflrfnlda
    gtwdqmqhnqlsakaehlmanastlneviqvllndtcvdilrlfiqagkadlerqvppma
    vvfartaqlllvcrvtsfyprpiavtwlrdgrevppspalstgtvlpnadltyqlrstll
    vspqdghgyacrvqhcslgrsllvpwh
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3jvgC (C:)
    dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
    fqrlvhadftpssgstyackvehetlkepqvykwdpef
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3jvgD (D:)
    dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
    fqrlvhadftpssgstyackvehetlkepqvykwdpef