PDB entry 3j3a

View 3j3a on RCSB PDB site
Description: Structure of the human 40S ribosomal proteins
Class: ribosome
Keywords: eukarya, eukaryotic, ribosomal, 80S, RNA, protein synthesis, mass spectrometry, RIBOSOME
Deposited on 2013-02-27, released 2013-05-01
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: EM
Resolution: 5 Å
R-factor: N/A
AEROSPACI score: -0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 40S Ribosomal protein SA
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 40s ribosomal protein s3a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 40S ribosomal protein S2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 40S ribosomal protein S3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 40S ribosomal protein S4, X isoform
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 40S ribosomal protein S5
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 40s ribosomal protein s6
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 40S ribosomal protein S7
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 40s ribosomal protein s8
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 40S ribosomal protein S9
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 40S ribosomal protein S10
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 40S ribosomal protein S11
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 40s ribosomal protein s12
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P25398 (Start-131)
      • conflict (51)
      • conflict (68)
      • conflict (98)
  • Chain 'N':
    Compound: 40S ribosomal protein S13
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 40s ribosomal protein s14
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 40S ribosomal protein S15
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 40S ribosomal protein S16
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 40S ribosomal protein S17
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 40S ribosomal protein S18
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 40S ribosomal protein S19
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 40S ribosomal protein S20
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 40S ribosomal protein S21
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 40S ribosomal protein S15a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 40S ribosomal protein S23
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 40S ribosomal protein S24
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 40S ribosomal protein S25
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: 40S ribosomal protein S26
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3j3aa_
  • Chain 'b':
    Compound: 40S ribosomal protein S27
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3j3ab_
  • Chain 'c':
    Compound: 40S ribosomal protein S28
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3j3ac_
  • Chain 'd':
    Compound: 40S ribosomal protein S29
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3j3ad_
  • Chain 'e':
    Compound: 40S ribosomal protein S30
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3j3ae_
  • Chain 'f':
    Compound: 40S ribosomal protein S27a
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3j3af_
  • Chain 'g':
    Compound: guanine nucleotide-binding protein subunit beta-2-like 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3j3ag_
  • Chain 'h':
    Compound: Plasminogen activator inhibitor 1 RNA-binding protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'z':
    Compound: Elongation factor 2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3j3az1, d3j3az2, d3j3az3, d3j3az4, d3j3az5

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    No sequence available.

  • Chain 'W':
    No sequence available.

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.

  • Chain 'Z':
    No sequence available.

  • Chain 'a':
    Sequence, based on SEQRES records: (download) 
    >3j3aa (a:)
mtkkrrnngrakkgrghvqpirctncarcvpkdkaikkfvirniveaaavrdiseasvfd
ayvlpklyvklhycvscaihskvvrnrsrearkdrtppprfrpagaaprpppkpm

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3aa (a:)
tkkrrnngrakkgrghvqpirctncarcvpkdkaikkfvirniveaaavrdiseasvfda
yvlpklyvklhycvscaihskvvrnrsrearkdrtppprfrpagaap

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j3ab (b:)
mplakdllhpspeeekrkhkkkrlvqspnsyfmdvkcpgcykittvfshaqtvvlcvgcs
tvlcqptggkarltegcsfrrkqh

  • Chain 'c':
    Sequence, based on SEQRES records: (download) 
    >3j3ac (c:)
mdtsrvqpiklarvtkvlgrtgsqgqctqvrvefmddtsrsiirnvkgpvregdvltlle
serearrlr

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3ac (c:)
rvqpiklarvtkvlgrtgsqgqctqvrvefmddtsrsiirnvkgpvregdvltllesere
arrl

  • Chain 'd':
    Sequence, based on SEQRES records: (download) 
    >3j3ad (d:)
mghqqlywshprkfgqgsrscrvcsnrhglirkyglnmcrqcfrqyakdigfikld

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3ad (d:)
qqlywshprkfgqgsrscrvcsnrhglirkyglnmcrqcfrqyakdigfikld

  • Chain 'e':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3j3ae (e:)
kvhgslaragkvrgqtpkvakqekkkkktgrakrrmqynrrfvnvvptfgkkkgpnans

  • Chain 'f':
    Sequence, based on SEQRES records: (download) 
    >3j3af (f:)
akkrkkksyttpkknkhkrkkvklavlkyykvdengkisrlrrecpsdecgagvfmashf
drhycgkccltycfnkpedk

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3af (f:)
kksyttpkknkhkrkkvklavlkyykvdengkisrlrrecpsdecgagvfmashfdrhyc
gkccltycfnk

  • Chain 'g':
    Sequence, based on SEQRES records: (download) 
    >3j3ag (g:)
mteqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralr
ghshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqi
vsgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnla
ncklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalc
fspnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfa
gytdnlvrvwqvtigtr

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3ag (g:)
teqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralrg
hshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqiv
sgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnlan
cklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalcf
spnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfag
ytdnlvrvwqvti

  • Chain 'h':
    No sequence available.

  • Chain 'z':
    Sequence, based on SEQRES records: (download) 
    >3j3az (z:)
mvnftvdqiraimdkkanirnmsviahvdhgkstltdslvckagiiasaragetrftdtr
kdeqercitikstaislfyelsendlnfikqskdgagflinlidspghvdfssevtaalr
vtdgalvvvdcvsgvcvqtetvlrqaiaerikpvlmmnkmdrallelqlepeelyqtfqr
ivenvnviistygegesgpmgnimidpvlgtvgfgsglhgwaftlkqfaemyvakfaakg
egqlgpaerakkvedmmkklwgdryfdpangkfsksatspegkklprtfcqlildpifkv
fdaimnfkkeetakliekldikldsedkdkegkpllkavmrrwlpagdallqmitihlps
pvtaqkyrcellyegppddeaamgikscdpkgplmmyiskmvptsdkgrfyafgrvfsgl
vstglkvrimgpnytpgkkedlylkpiqrtilmmgryvepiedvpcgnivglvgvdqflv
ktgtittfehahnmrvmkfsvspvvrvaveaknpadlpklveglkrlaksdpmvqciiee
sgehiiagagelhleiclkdleedhacipikksdpvvsyretvseesnvlclskspnkhn
rlymkarpfpdglaedidkgevsarqelkqrarylaekyewdvaearkiwcfgpdgtgpn
iltditkgvqylneikdsvvagfqwatkegalceenmrgvrfdvhdvtlhadaihrgggq
iiptarrclyasvltaqprlmepiylveiqcpeqvvggiygvlnrkrghvfeesqvagtp
mfvvkaylpvnesfgftadlrsntggqafpqcvfdhwqilpgdpfdnssrpsqvvaetrk
rkglkegipaldnfldkl

    Sequence, based on observed residues (ATOM records): (download) 
    >3j3az (z:)
nftvdqiraimdkkanirnmsviahvdhgkstltdslvckagiiasaragetrftdtrkd
eqercitikstaislfyelsendlnfikqskdgagflinlidspghvdfssevtaalrvt
dgalvvvdcvsgvcvqtetvlrqaiaerikpvlmmnkmdrallelqlepeelyqtfqriv
envnviistygegesgpmgnimidpvlgtvgfgsglhgwaftlkqfaemyvakfaakgeg
qlgpaerakkvedmmkklwgdryfdpangkfsksatspegkklprtfcqlildpifkvfd
aimnfkkeetakliekldikldsedkdkegkpllkavmrrwlpagdallqmitihlpspv
taqkyrcellyegppddeaamgikscdpkgplmmyiskmvptsdkgrfyafgrvfsglvs
tglkvrimgpnytpgkkedlylkpiqrtilmmgryvepiedvpcgnivglvgvdqflvkt
gtittfehahnmrvmkfsvspvvrvaveaknpadlpklveglkrlaksdpmvqciieesg
ehiiagagelhleiclkdleedhacipikksdpvvsyretvseesnvlclskspnkhnrl
ymkarpfpdglaedidkgevsarqelkqrarylaekyewdvaearkiwcfgpdgtgpnil
tditkgvqylneikdsvvagfqwatkegalceenmrgvrfdvhdvtlhadaihrgggqii
ptarrclyasvltaqprlmepiylveiqcpeqvvggiygvlnrkrghvfeesqvagtpmf
vvkaylpvnesfgftadlrsntggqafpqcvfdhwqilpgdpfdnssrpsqvvaetrkrk
glkegipaldnfldkl