PDB entry 3ilp

View 3ilp on RCSB PDB site
Description: Structure of mCD1d with bound glycolipid BbGL-2f from Borrelia burgdorferi
Class: Immune System
Keywords: antigen presentation. iNKT cells, glycolipid, host defense, Cell membrane, Disulfide bond, Endosome, Glycoprotein, Immune response, Immunoglobulin domain, Innate immunity, Lysosome, Membrane, Transmembrane, MHC I, Immune System
Deposited on 2009-08-07, released 2010-01-26
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-03-23, with a file datestamp of 2016-03-18.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein CD1d1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1.1, CD1d, Cd1d1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ilpa1, d3ilpa2
  • Chain 'B':
    Compound: beta-2 microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2m, beta-2-microglobulin, mCG_11606, RP23-34E24.5-001
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ilpb_
  • Heterogens: NAG, 1L2, DMS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ilpA (A:)
    seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
    qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
    qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
    sdlekqekpvawlssvpssadghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
    adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ilpA (A:)
    ytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqweklq
    hmfqvyrvsftrdiqelvkmmkedypieiqlsagcemyasesflhvafqgkyvvrfwgts
    wqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpvaw
    lssvpssaghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqatldv
    eageeaglacrvkhsslggqdiilyw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ilpB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm