PDB entry 3ikc

View 3ikc on RCSB PDB site
Description: Structure of S67-27 in Complex with Kdo(2.8)-7-O-methyl-Kdo
Class: immune system
Keywords: antibody, Kdo, Chlamydia, LPS, Fab, carbohydrate, IMMUNE SYSTEM
Deposited on 2009-08-05, released 2009-10-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-01-12, with a file datestamp of 2010-01-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.238
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Immunoglubilin light chain (IGG3)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IKC (Start-217)
    Domains in SCOPe 2.06: d3ikca1, d3ikca2
  • Chain 'B':
    Compound: Immunoglobulin heavy chain (IGG3)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IKC (0-225)
  • Chain 'C':
    Compound: Immunoglubilin light chain (IGG3)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IKC (Start-217)
    Domains in SCOPe 2.06: d3ikcc1, d3ikcc2
  • Chain 'D':
    Compound: Immunoglobulin heavy chain (IGG3)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3IKC (0-225)
  • Heterogens: KDO, KME, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ikcA (A:)
    divmtqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastr
    esgvpdrftgsgsgtdftltissvqaedlavyyckqsnnlrtfgggtkleikradaaptv
    sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
    sstltltkdeyerhnsytceathktstspivksfnrne
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ikcA (A:)
    ivmtqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastre
    sgvpdrftgsgsgtdftltissvqaedlavyyckqsnnlrtfgggtkleikradaaptvs
    ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
    stltltkdeyerhnsytceathktstspivksfnrne
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ikcC (C:)
    divmtqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastr
    esgvpdrftgsgsgtdftltissvqaedlavyyckqsnnlrtfgggtkleikradaaptv
    sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
    sstltltkdeyerhnsytceathktstspivksfnrne
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ikcC (C:)
    ivmtqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastre
    sgvpdrftgsgsgtdftltissvqaedlavyyckqsnnlrtfgggtkleikradaaptvs
    ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
    stltltkdeyerhnsytceathktstspivksfnrne
    

  • Chain 'D':
    No sequence available.