PDB entry 3iet
View 3iet on RCSB PDB site
Description: Crystal Structure of 237mAb with antigen
Class: immune system
Keywords: glycopepitde, antibody, Fab, carbohydrate-biding, tumour, IMMUNE SYSTEM
Deposited on
2009-07-23, released
2010-06-23
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-03-23, with a file datestamp of
2011-03-18.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.229
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Immunoglobulin light chain (IgG2a)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ieta1, d3ieta2 - Chain 'B':
Compound: Immunoglobulin heavy chain (IgG2a)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Immunoglobulin light chain (IgG2a)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ietc1, d3ietc2 - Chain 'D':
Compound: Immunoglobulin heavy chain (IgG2a)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: Podoplanin
Species: Mus musculus [TaxId:10090]
Gene: Pdpn, RP23-348F1.2-002
Database cross-references and differences (RAF-indexed):
- Chain 'X':
Compound: Podoplanin
Species: Mus musculus [TaxId:10090]
Gene: Pdpn, RP23-348F1.2-002
Database cross-references and differences (RAF-indexed):
- Heterogens: ZN, A2G, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3ietA (A:)
diqltqtplslpvslgdqasiscrssqslvhsngntylhwylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkissveaedlgvyfcsqsthvptfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrec
Sequence, based on observed residues (ATOM records): (download)
>3ietA (A:)
iqltqtplslpvslgdqasiscrssqslvhsngntylhwylqkpgqspklliykvsnrfs
gvpdrfsgsgsgtdftlkissveaedlgvyfcsqsthvptfgggtkleikradaaptvsi
fppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmss
tltltkdeyerhnsytceathktstspivksfnre
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3ietC (C:)
diqltqtplslpvslgdqasiscrssqslvhsngntylhwylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkissveaedlgvyfcsqsthvptfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrec
- Chain 'D':
No sequence available.
- Chain 'Q':
No sequence available.
- Chain 'X':
No sequence available.