PDB entry 3h5y

View 3h5y on RCSB PDB site
Description: Norovirus polymerase+primer/template+CTP complex at 6 mM MnCl2
Class: Transferase/RNA
Keywords: caliciviruses, viral RNA polymerase, Hydrolase, Nucleotide-binding, Nucleotidyltransferase, Protease, RNA replication, RNA-directed RNA polymerase, Thiol protease, Transferase, Transferase-RNA COMPLEX
Deposited on 2009-04-22, released 2009-05-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.77 Å
R-factor: 0.206
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA dependent RNA polymerase
    Species: Norwalk virus [TaxId:11983]
    Gene: polymerase
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3h5ya_
  • Chain 'P':
    Compound: 5'-r(*up*gp*cp*cp*cp*gp*gp*g)-3'
    Species: synthetic, synthetic
  • Chain 'T':
    Compound: 5'-r(p*up*gp*cp*cp*cp*gp*gp*gp*c)-3'
    Species: synthetic, synthetic
  • Heterogens: MN, CTP, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3h5yA (A:)
gsdskgtycgapilgpgsapklstktkfwrsstaplppgtyepaylggkdprvkggpslq
qvmrdqlkpfteprgkppkpsvleaakktiinvleqtidppdkwsfaqacasldkttssg
hphhmrkndcwngesftgkladqaskanlmfeegknmtpvytgalkdelvktdkiygkik
krllwgsdlatmircarafgglmdelkthcvtlpirvgmnmnedgpiiferhsryryhyd
adysrwdstqqravlaaaleimvkfssephlaqvvaedllspsvvdvgdftisineglps
gvpctsqwnsiahwlltlcalsevtnlspdiiqanslfsfygddeivstdikldpeklta
klkeyglkptrpdktegplvisedlngltflrrtvtrdpagwfgkleqssilrqmywtrg
pnhedpsetmiphsqrpiqlmsllgeaalhgpafyskisklviaelkeggmdfyvprqep
mfrwmrfsdlstwegdrnlapsfvnedgve

    Sequence, based on observed residues (ATOM records): (download) 
    >3h5yA (A:)
kgtycgapilgpgsapklstktkfwrsstaplppgtyepaylggkdprvkggpslqqvmr
dqlkpfteprgkppkpsvleaakktiinvleqtidppdkwsfaqacasldkttssghphh
mrkndcwngesftgkladqaskanlmfeegknmtpvytgalkdelvktdkiygkikkrll
wgsdlatmircarafgglmdelkthcvtlpirvgmnmnedgpiiferhsryryhydadys
rwdstqqravlaaaleimvkfssephlaqvvaedllspsvvdvgdftisineglpsgvpc
tsqwnsiahwlltlcalsevtnlspdiiqanslfsfygddeivstdikldpekltaklke
yglkptrpplvisedlngltflrrtvtrdpagwfgkleqssilrqmywtrgpnhedpset
miphsqrpiqlmsllgeaalhgpafyskisklviaeldfyvprqepmfrwmrfs

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.