PDB entry 3gbm
View 3gbm on RCSB PDB site
Description: Crystal Structure of Fab CR6261 in Complex with a H5N1 influenza virus hemagglutinin.
Class: viral protein / immune system
Keywords: hemagglutinin, Fab, neutralizing antibodies, antibody, avian flu, Envelope protein, Fusion protein, viral protein - immune system COMPLEX
Deposited on
2009-02-20, released
2009-03-10
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.206
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin
Species: Influenza A virus (A/Viet Nam/1203/2004(H5N1)) [TaxId:284218]
Gene: HA, Hemagglutinin (HA)
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3gbma_ - Chain 'B':
Compound: Hemagglutinin
Species: Influenza A virus (A/Viet Nam/1203/2004(H5N1)) [TaxId:284218]
Gene: HA, Hemagglutinin (HA)
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Hemagglutinin
Species: Influenza A virus (A/Viet Nam/1203/2004(H5N1)) [TaxId:284218]
Gene: HA, Hemagglutinin (HA)
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3gbmc_ - Chain 'D':
Compound: Hemagglutinin
Species: Influenza A virus (A/Viet Nam/1203/2004(H5N1)) [TaxId:284218]
Gene: HA, Hemagglutinin (HA)
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: antibody (Fab)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: antibody (Fab)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: antibody (Fab)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3gbml1, d3gbml2 - Chain 'M':
Compound: antibody (Fab)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3gbmm1, d3gbmm2 - Heterogens: NAG, BMA, EDO, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3gbmA (A:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcs
vagwllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqi
ipksswssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrnspqrerrrkkr
Sequence, based on observed residues (ATOM records): (download)
>3gbmA (A:)
dpgdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsv
agwllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqii
pksswssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlwg
ihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpnd
ainfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpl
tigecpkyvksnrlvlatglrnsp
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3gbmC (C:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcs
vagwllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqi
ipksswssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrnspqrerrrkkr
Sequence, based on observed residues (ATOM records): (download)
>3gbmC (C:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsva
gwllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiip
ksswssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrnsp
- Chain 'D':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3gbmL (L:)
qsvltqppsvsaapgqkvtiscsgsssnigndyvswyqqlpgtapklliydnnkrpsgip
drfsgsksgtsatlgitglqtgdeanyycatwdrrptayvvfgggtkltvlgaaagqpka
apsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnk
yaassylsltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>3gbmL (L:)
vltqppsvsaapgqkvtiscsgsssnigndyvswyqqlpgtapklliydnnkrpsgipdr
fsgsksgtsatlgitglqtgdeanyycatwdrtayvvfgggtkltqpkaapsvtlfppss
eelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassylsltp
eqwkshrsyscqvthegstvektvapte
- Chain 'M':
Sequence, based on SEQRES records: (download)
>3gbmM (M:)
qsvltqppsvsaapgqkvtiscsgsssnigndyvswyqqlpgtapklliydnnkrpsgip
drfsgsksgtsatlgitglqtgdeanyycatwdrrptayvvfgggtkltvlgaaagqpka
apsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnk
yaassylsltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>3gbmM (M:)
vltqppsvsaapgqkvtiscsgsssnigndyvswyqqlpgtapklliydnnkrpsgipdr
fsgsksgtsatlgitglqtgdeanyycatwdrtayvvfgggtkltvlapsvtlfppssee
lqankatlvclisdfypgavtvawkaagvetttpskqsnnkyaassylsltpeqwkshrs
yscqvthestvektvap