PDB entry 3ga6

View 3ga6 on RCSB PDB site
Description: Mth0212 in complex with two DNA helices
Class: hydrolase/DNA
Keywords: protein-DNA complex, twin, disorder of DNA, 3'-5' exonuclease, AP endonuclease, 2'-desoxyuridine endonuclease, HYDROLASE-DNA COMPLEX
Deposited on 2009-02-16, released 2010-03-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: exodeoxyribonuclease
    Species: Methanothermobacter thermautotrophicus [TaxId:187420]
    Gene: mth0212, MTH212, MTH_212
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26314
      • engineered mutation (150)
    Domains in SCOPe 2.07: d3ga6a_
  • Chain 'B':
    Compound: exodeoxyribonuclease
    Species: Methanothermobacter thermautotrophicus [TaxId:187420]
    Gene: mth0212, MTH212, MTH_212
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26314
      • engineered mutation (1)
      • engineered mutation (150)
    Domains in SCOPe 2.07: d3ga6b_
  • Chain 'D':
    Compound: 5'-d(*gp*cp*cp*cp*tp*gp*up*gp*cp*ap*gp*c)-3'
  • Chain 'F':
    Compound: 5'-d(*gp*cp*tp*gp*cp*gp*cp*ap*gp*gp*gp*c)-3'
  • Chain 'G':
    Compound: 5'-d(*gp*cp*cp*cp*tp*gp*up*gp*cp*ap*gp*c)-3'
  • Chain 'H':
    Compound: 5'-d(*gp*cp*tp*gp*cp*gp*cp*ap*gp*gp*gp*c)-3'
  • Heterogens: GOL, NA, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ga6A (A:)
    mavlkiiswnvnglravhrkgflkwfmeekpdilclqeikaapeqlprklrhvegyrsff
    tpaerkgysgvamytkvppsslregfgverfdtegriqiadfddfllyniyfpngkmsee
    rlkyklefydafledvnrerdsgrnviicgnfntahreidlarpkensnvsgflpveraw
    idkfiengyvdtfrmfnsdpgqytwwsyrtrarernvgwrldyffvneefkgkvkrswil
    sdvmgsdhcpigleiellehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ga6A (A:)
    vlkiiswnvnglravhrkgflkwfmeekpdilclqeikaapeqlprklrhvegyrsfftp
    aerkgysgvamytkvppsslregfgverfdtegriqiadfddfllyniyfpngkmseerl
    kyklefydafledvnrerdsgrnviicgnfntahreidlarpkensnvsgflpverawid
    kfiengyvdtfrmfnsdpgqytwwsyrtrarernvgwrldyffvneefkgkvkrswilsd
    vmgsdhcpigleie
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ga6B (B:)
    mavlkiiswnvnglravhrkgflkwfmeekpdilclqeikaapeqlprklrhvegyrsff
    tpaerkgysgvamytkvppsslregfgverfdtegriqiadfddfllyniyfpngkmsee
    rlkyklefydafledvnrerdsgrnviicgnfntahreidlarpkensnvsgflpveraw
    idkfiengyvdtfrmfnsdpgqytwwsyrtrarernvgwrldyffvneefkgkvkrswil
    sdvmgsdhcpigleiellehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ga6B (B:)
    avlkiiswnvnglravhrkgflkwfmeekpdilclqeikaapeqlprklrhvegyrsfft
    paerkgysgvamytkvppsslregfgverfdtegriqiadfddfllyniyfpngkmseer
    lkyklefydafledvnrerdsgrnviicgnfntahreidlarpkensnvsgflpverawi
    dkfiengyvdtfrmfnsdpgqytwwsyrtrarernvgwrldyffvneefkgkvkrswils
    dvmgsdhcpigleie
    

  • Chain 'D':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.