PDB entry 3g0r

View 3g0r on RCSB PDB site
Description: Complex of Mth0212 and an 8bp dsDNA with distorted ends
Class: hydrolase/DNA
Keywords: protein-DNA complex, double-strand specific 3'-5' exonuclease, AP endonuclease, 2'-deoxyuridine endonuclease, HYDROLASE-DNA COMPLEX
Deposited on 2009-01-28, released 2010-03-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: exodeoxyribonuclease
    Species: Methanothermobacter thermautotrophicus [TaxId:187420]
    Gene: mth0212, MTH212, MTH_212
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26314 (Start-256)
      • engineered mutation (150)
    Domains in SCOPe 2.07: d3g0ra_
  • Chain 'B':
    Compound: exodeoxyribonuclease
    Species: Methanothermobacter thermautotrophicus [TaxId:187420]
    Gene: mth0212, MTH212, MTH_212
    Database cross-references and differences (RAF-indexed):
    • Uniprot O26314
      • engineered mutation (150)
    Domains in SCOPe 2.07: d3g0rb_
  • Chain 'G':
    Compound: 5'-d(*gp*cp*tp*gp*cp*gp*cp*ap*gp*gp*gp*cp*g)-3'
  • Chain 'K':
    Compound: 5'-d(*cp*cp*cp*tp*gp*up*gp*cp*ap*gp*c)-3'
  • Heterogens: GOL, PG4, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3g0rA (A:)
    mavlkiiswnvnglravhrkgflkwfmeekpdilclqeikaapeqlprklrhvegyrsff
    tpaerkgysgvamytkvppsslregfgverfdtegriqiadfddfllyniyfpngkmsee
    rlkyklefydafledvnrerdsgrnviicgnfntahreidlarpkensnvsgflpveraw
    idkfiengyvdtfrmfnsdpgqytwwsyrtrarernvgwrldyffvneefkgkvkrswil
    sdvmgsdhcpigleiellehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g0rA (A:)
    vlkiiswnvnglravhrkgflkwfmeekpdilclqeikaapeqlprklrhvegyrsfftp
    aerkgysgvamytkvppsslregfgverfdtegriqiadfddfllyniyfpngkmseerl
    kyklefydafledvnrerdsgrnviicgnfntahreidlarpkensnvsgflpverawid
    kfiengyvdtfrmfnsdpgqytwwsyrtrarernvgwrldyffvneefkgkvkrswilsd
    vmgsdhcpigleiel
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3g0rB (B:)
    mavlkiiswnvnglravhrkgflkwfmeekpdilclqeikaapeqlprklrhvegyrsff
    tpaerkgysgvamytkvppsslregfgverfdtegriqiadfddfllyniyfpngkmsee
    rlkyklefydafledvnrerdsgrnviicgnfntahreidlarpkensnvsgflpveraw
    idkfiengyvdtfrmfnsdpgqytwwsyrtrarernvgwrldyffvneefkgkvkrswil
    sdvmgsdhcpigleiellehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3g0rB (B:)
    vlkiiswnvnglravhrkgflkwfmeekpdilclqeikaapeqlprklrhvegyrsfftp
    aerkgysgvamytkvppsslregfgverfdtegriqiadfddfllyniyfpngkmseerl
    kyklefydafledvnrerdsgrnviicgnfntahreidlarpkensnvsgflpverawid
    kfiengyvdtfrmfnsdpgqytwwsyrtrarernvgwrldyffvneefkgkvkrswilsd
    vmgsdhcpigleie
    

  • Chain 'G':
    No sequence available.

  • Chain 'K':
    No sequence available.