PDB entry 3fye

View 3fye on RCSB PDB site
Description: Catalytic core subunits (I and II) of cytochrome c oxidase from Rhodobacter sphaeroides in the reduced state
Class: oxidoreductase
Keywords: conformational changes, Cell membrane, Copper, Electron transport, Heme, Hydrogen ion transport, Ion transport, Iron, Membrane, Metal-binding, Respiratory chain, Transmembrane, Transport, OXIDOREDUCTASE
Deposited on 2009-01-22, released 2009-06-16
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-06-16, with a file datestamp of 2009-06-12.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.196
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytochrome c oxidase subunit 1
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Gene: ctaD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3fyea_
  • Chain 'B':
    Compound: Cytochrome c oxidase subunit 2
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Gene: ctaC, coxII, ctaB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03736 (Start-255)
      • expression tag (256-259)
    Domains in SCOPe 2.05: d3fyeb1, d3fyeb2
  • Chain 'C':
    Compound: Cytochrome c oxidase subunit 1
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Gene: ctaD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3fyec_
  • Chain 'D':
    Compound: Cytochrome c oxidase subunit 2
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Gene: ctaC, coxII, ctaB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03736 (Start-255)
      • expression tag (256-259)
    Domains in SCOPe 2.05: d3fyed1, d3fyed2
  • Heterogens: HEA, CU1, MG, CA, UNX, DMU, TRD, HTO, CD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fyeA (A:)
madaaihghehdrrgfftrwfmstnhkdigvlylftgglvglisvaftvymrmelmapgv
qfmcaehlesglvkgffqslwpsavenctpnghlwnvmitghgilmmffvvipalfggfg
nyfmplhigapdmafprmnnlsywlyvagtslavaslfapggngqlgsgigwvlypplst
sesgystdlaifavhlsgassilgainmittflnmrapgmtmhkvplfawsifvtawlil
lalpvlagaitmlltdrnfgttffqpsgggdpvlyqhilwffghpevyiivlpafgivsh
viatfakkpifgylpmvyamvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptg
ikifswiatmwggsielktpmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahf
hyvmslgavfgifagiyfwigkmsgrqypewagklhfwmmfvganltffpqhflgrqgmp
rryidypeafatwnfvsslgaflsfasflfflgvifytltrgarvtannywnehadtlew
tltspppehtfeqlpkredwerapah

    Sequence, based on observed residues (ATOM records): (download) 
    >3fyeA (A:)
ftrwfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgf
fqslwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapdmafp
rmnnlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhl
sgassilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltd
rnfgttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpm
vyamvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgikifswiatmwggsie
lktpmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagi
yfwigkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfv
sslgaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppehtf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3fyeB (B:)
qqqsleiigrpqpggtgfqpsaspvatqihwldgfilviiaaitifvtllilyavwrfhe
krnkvparfthnspleiawtivpivilvaigafslpvlfnqqeipeadvtvkvtgyqwyw
gyeypdeeisfesymigspatggdnrmspeveqqlieagysrdefllatdtamvvpvnkt
vvvqvtgadvihswtvpafgvkqdavpgrlaqlwfraeregiffgqcselcgishaympi
tvkvvseeayaawleqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fyeB (B:)
leiigrpqpggtgfqpsaspvatqihwldgfilviiaaitifvtllilyavwrfhekrnk
vparfthnspleiawtivpivilvaigafslpvlfnqqeipeadvtvkvtgyqwywgyey
pdeeisfesymigspatggdnrmspeveqqlieagysrdefllatdtamvvpvnktvvvq
vtgadvihswtvpafgvkqdavpgrlaqlwfraeregiffgqcselcgishaympitvkv
vseeayaawleqhhhh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3fyeC (C:)
madaaihghehdrrgfftrwfmstnhkdigvlylftgglvglisvaftvymrmelmapgv
qfmcaehlesglvkgffqslwpsavenctpnghlwnvmitghgilmmffvvipalfggfg
nyfmplhigapdmafprmnnlsywlyvagtslavaslfapggngqlgsgigwvlypplst
sesgystdlaifavhlsgassilgainmittflnmrapgmtmhkvplfawsifvtawlil
lalpvlagaitmlltdrnfgttffqpsgggdpvlyqhilwffghpevyiivlpafgivsh
viatfakkpifgylpmvyamvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptg
ikifswiatmwggsielktpmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahf
hyvmslgavfgifagiyfwigkmsgrqypewagklhfwmmfvganltffpqhflgrqgmp
rryidypeafatwnfvsslgaflsfasflfflgvifytltrgarvtannywnehadtlew
tltspppehtfeqlpkredwerapah

    Sequence, based on observed residues (ATOM records): (download) 
    >3fyeC (C:)
wfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgffqs
lwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapdmafprmn
nlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhlsga
ssilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltdrnf
gttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpmvya
mvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgikifswiatmwggsielkt
pmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagiyfw
igkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfvssl
gaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppeht

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3fyeD (D:)
qqqsleiigrpqpggtgfqpsaspvatqihwldgfilviiaaitifvtllilyavwrfhe
krnkvparfthnspleiawtivpivilvaigafslpvlfnqqeipeadvtvkvtgyqwyw
gyeypdeeisfesymigspatggdnrmspeveqqlieagysrdefllatdtamvvpvnkt
vvvqvtgadvihswtvpafgvkqdavpgrlaqlwfraeregiffgqcselcgishaympi
tvkvvseeayaawleqhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fyeD (D:)
leiigrpqpggtgfqpsaspvatqihwldgfilviiaaitifvtllilyavwrfhekrnk
vparfthnspleiawtivpivilvaigafslpvlfnqqeipeadvtvkvtgyqwywgyey
pdeeisfesymigspatggdnrmspeveqqlieagysrdefllatdtamvvpvnktvvvq
vtgadvihswtvpafgvkqdavpgrlaqlwfraeregiffgqcselcgishaympitvkv
vseeayaawleqhhhh