PDB entry 3fkd

View 3fkd on RCSB PDB site
Description: The crystal structure of L-threonine-O-3-phosphate decarboxylase from Porphyromonas gingivalis
Class: lyase
Keywords: 11247b, structural genomic, L-threonine-O-3-phosphate decarboxylase Porphyromonas gingivalis, Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, lyase
Deposited on 2008-12-16, released 2009-02-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-Threonine-O-3-Phosphate Decarboxylase
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: PG_0012
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3fkda_
  • Chain 'B':
    Compound: L-Threonine-O-3-Phosphate Decarboxylase
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: PG_0012
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3fkdb_
  • Chain 'C':
    Compound: L-Threonine-O-3-Phosphate Decarboxylase
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: PG_0012
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3fkdc_
  • Chain 'D':
    Compound: L-Threonine-O-3-Phosphate Decarboxylase
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: PG_0012
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3fkdd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fkdA (A:)
mifghgdegitplsseivnfsttvwtdgdkdhlekhlvenlncirhypepdagtlrqmla
krnsvdnnailvtngptaafyqiaqafrgsrsliaipsfaeyedacrmyehevcfypsne
digeadfsnmdfcwlcnpnnpdgrllqrteilrllndhpdttfvldqsyvsftteevirp
adikgrknlvmvysfshaygipglrigyivankdfmkrvaafstpwavnalaieaakfil
ihpaqftlpirkwqrntvdfitalnrldgvevhpsgttffllrlkkgtaaelkkymleey
nmlirdasnfrgldesyvrittqrpaqnqlfikaletflekyeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fkdA (A:)
eivnfsttvwtdgdkdhlekhlvenlncirhypepdagtlrqmlakrnsvdnnailvtng
ptaafyqiaqafrgsrsliaipsfaeyedacrmyehevcfypsnedigeadfsnmdfcwl
cnpnnpdgrllqrteilrllndhpdttfvldqsyvsftteevirpadikgrknlvmvysf
shaygipglrigyivankdfmkrvaafstpwavnalaieaakfilihpaqftlpirkwqr
ntvdfitalnrldgvevhpsgttffllrlkkgtaaelkkymleeynmlirdasnfrglde
syvrittqrpaqnqlfikaletflek

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3fkdB (B:)
mifghgdegitplsseivnfsttvwtdgdkdhlekhlvenlncirhypepdagtlrqmla
krnsvdnnailvtngptaafyqiaqafrgsrsliaipsfaeyedacrmyehevcfypsne
digeadfsnmdfcwlcnpnnpdgrllqrteilrllndhpdttfvldqsyvsftteevirp
adikgrknlvmvysfshaygipglrigyivankdfmkrvaafstpwavnalaieaakfil
ihpaqftlpirkwqrntvdfitalnrldgvevhpsgttffllrlkkgtaaelkkymleey
nmlirdasnfrgldesyvrittqrpaqnqlfikaletflekyeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fkdB (B:)
ivnfsttvwtdgdkdhlekhlvenlncirhypepdagtlrqmlakrnsvdnnailvtngp
taafyqiaqafrgsrsliaipsfaeyedacrmyehevcfypsnedigeadfsnmdfcwlc
npnnpdgrllqrteilrllndhpdttfvldqsyvsftteevirpadikgrknlvmvysfs
haygipglrigyivankdfmkrvaafstpwavnalaieaakfilihpaqftlpirkwqrn
tvdfitalnrldgvevhpsgttffllrlkkgtaaelkkymleeynmlirdasnfrgldes
yvrittqrpaqnqlfikaletflek

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3fkdC (C:)
mifghgdegitplsseivnfsttvwtdgdkdhlekhlvenlncirhypepdagtlrqmla
krnsvdnnailvtngptaafyqiaqafrgsrsliaipsfaeyedacrmyehevcfypsne
digeadfsnmdfcwlcnpnnpdgrllqrteilrllndhpdttfvldqsyvsftteevirp
adikgrknlvmvysfshaygipglrigyivankdfmkrvaafstpwavnalaieaakfil
ihpaqftlpirkwqrntvdfitalnrldgvevhpsgttffllrlkkgtaaelkkymleey
nmlirdasnfrgldesyvrittqrpaqnqlfikaletflekyeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fkdC (C:)
ivnfsttvwtdgddhlekhlvenlncirhypepdagtlrqmlakrnsvdnnailvtngpt
aafyqiaqafrgsrsliaipsfaeyedacrmyehevcfypsnedigeadfsnmdfcwlcn
pnnpdgrllqrteilrllndhpdttfvldqsyvsftteevirpadikgrknlvmvysfsh
aygipglrigyivankdfmkrvaafstpwavnalaieaakfilihpaqftlpirkwqrnt
vdfitalnrldgvevhpsgttffllrlkkgtaaelkkymleeynmlirdasnfrgldesy
vrittqrpaqnqlfikaletfleky

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3fkdD (D:)
mifghgdegitplsseivnfsttvwtdgdkdhlekhlvenlncirhypepdagtlrqmla
krnsvdnnailvtngptaafyqiaqafrgsrsliaipsfaeyedacrmyehevcfypsne
digeadfsnmdfcwlcnpnnpdgrllqrteilrllndhpdttfvldqsyvsftteevirp
adikgrknlvmvysfshaygipglrigyivankdfmkrvaafstpwavnalaieaakfil
ihpaqftlpirkwqrntvdfitalnrldgvevhpsgttffllrlkkgtaaelkkymleey
nmlirdasnfrgldesyvrittqrpaqnqlfikaletflekyeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fkdD (D:)
sttvwtdgkdhlekhlvenlncirhypepdagtlrqmlakrnsvdnnailvtngptaafy
qiaqafrgsrsliaipsfaeyedacrmyehevcfypsnedigeadfsnmdfcwlcnpnnp
dgrllqrteilrllndhpdttfvldqsyvsftteevirpadikgrknlvmvysfshaygi
pglrigyivankdfmkrvaafstpwavnalaieaakfilihpaqftlpirkwqrntvdfi
talnrldgvevhpsgttffllrlkkgtaaelkknmlirdasnfrgldesyvrittqrpaq
nqlfikalet