PDB entry 3fef

View 3fef on RCSB PDB site
Description: Crystal structure of putative glucosidase lplD from bacillus subtilis
Class: hydrolase
Keywords: lplD, gulosidase, structural genomics, UNKNOWN FUNCTION, Glycosidase, Hydrolase, Manganese, Metal-binding, NAD, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC
Deposited on 2008-11-28, released 2008-12-30
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-03-20, with a file datestamp of 2013-03-15.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.19
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative glucosidase lplD, ALPHA-GALACTURONIDASE
    Species: Bacillus subtilis [TaxId:1423]
    Gene: BSU07130, lplD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fefa1, d3fefa2
  • Chain 'B':
    Compound: Putative glucosidase lplD, ALPHA-GALACTURONIDASE
    Species: Bacillus subtilis [TaxId:1423]
    Gene: BSU07130, lplD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fefb1, d3fefb2
  • Chain 'C':
    Compound: Putative glucosidase lplD, ALPHA-GALACTURONIDASE
    Species: Bacillus subtilis [TaxId:1423]
    Gene: BSU07130, lplD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fefc1, d3fefc2
  • Chain 'D':
    Compound: Putative glucosidase lplD, ALPHA-GALACTURONIDASE
    Species: Bacillus subtilis [TaxId:1423]
    Gene: BSU07130, lplD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3fefd1, d3fefd2
  • Heterogens: SO4, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fefA (A:)
msldqikiayigggsqgwarslmsdlsidermsgtvalydldfeaaqknevignhsgngr
wryeavstlkkalsaadiviisilpgslddmevdvhlpercgiyqsvgdtvgpggiirgl
ravpifaeiarairdyapeswvinytnpmsvctrvlykvfpgikaigcchevfgtqklla
emvterlgievprredirvnvlginhftwitkasyrhidllpifrefsahygesgyeleg
ecwrdsvfcsahrvafdlfetygaipaagdrhlaeflpgpylkqpevwkfhltpisfrkq
draekrqeterlivqqrgvaekasgeegvniiaallglgelvtnvnmpnqgqvlnlpiqa
ivetnafitrnrvqpilsgalpkgvemlaarhisnqeavadagltkdtglafqaflndpl
vqidrsdaeqlfndmlqcimqseghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fefA (A:)
ldqikiayigggsqgwarslmsdlsidermsgtvalydldfeaaqknevignhsgngrwr
yeavstlkkalsaadiviisilpgslddmevdvhlpercgiyqsvgdtvgpggiirglra
vpifaeiarairdyapeswvinytnpmsvctrvlykvfpgikaigcchevfgtqkllaem
vterlgievprredirvnvlginhftwitkasyrhidllpifrefsahygesgyelegec
wrdsvfcsahrvafdlfetygaipaagdrhlaeflpgpylkqpevwkfhltpisfrkqdr
aekrqeterlivqqrgvaekasgeegvniiaallglgelvtnvnmpnqgqvlnlpiqaiv
etnafitrnrvqpilsgalpkgvemlaarhisnqeavadagltkdtglafqaflndplvq
idrsdaeqlfndml

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3fefB (B:)
msldqikiayigggsqgwarslmsdlsidermsgtvalydldfeaaqknevignhsgngr
wryeavstlkkalsaadiviisilpgslddmevdvhlpercgiyqsvgdtvgpggiirgl
ravpifaeiarairdyapeswvinytnpmsvctrvlykvfpgikaigcchevfgtqklla
emvterlgievprredirvnvlginhftwitkasyrhidllpifrefsahygesgyeleg
ecwrdsvfcsahrvafdlfetygaipaagdrhlaeflpgpylkqpevwkfhltpisfrkq
draekrqeterlivqqrgvaekasgeegvniiaallglgelvtnvnmpnqgqvlnlpiqa
ivetnafitrnrvqpilsgalpkgvemlaarhisnqeavadagltkdtglafqaflndpl
vqidrsdaeqlfndmlqcimqseghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fefB (B:)
ldqikiayigggsqgwarslmsdlsidermsgtvalydldfeaaqknevignhsgngrwr
yeavstlkkalsaadiviisilpgslddmevdvhlpercgiyqsvgdtvgpggiirglra
vpifaeiarairdyapeswvinytnpmsvctrvlykvfpgikaigcchevfgtqkllaem
vterlgievprredirvnvlginhftwitkasyrhidllpifrefsahygesgyelegec
wrdsvfcsahrvafdlfetygaipaagdrhlaeflpgpylkqpevwkfhltpisfrkqdr
aekrqeterlivqqrgvaekasgeegvniiaallglgelvtnvnmpnqgqvlnlpiqaiv
etnafitrnrvqpilsgalpkgvemlaarhisnqeavadagltkdtglafqaflndplvq
idrsdaeqlfndml

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3fefC (C:)
msldqikiayigggsqgwarslmsdlsidermsgtvalydldfeaaqknevignhsgngr
wryeavstlkkalsaadiviisilpgslddmevdvhlpercgiyqsvgdtvgpggiirgl
ravpifaeiarairdyapeswvinytnpmsvctrvlykvfpgikaigcchevfgtqklla
emvterlgievprredirvnvlginhftwitkasyrhidllpifrefsahygesgyeleg
ecwrdsvfcsahrvafdlfetygaipaagdrhlaeflpgpylkqpevwkfhltpisfrkq
draekrqeterlivqqrgvaekasgeegvniiaallglgelvtnvnmpnqgqvlnlpiqa
ivetnafitrnrvqpilsgalpkgvemlaarhisnqeavadagltkdtglafqaflndpl
vqidrsdaeqlfndmlqcimqseghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fefC (C:)
ldqikiayigggsqgwarslmsdlsidermsgtvalydldfeaaqknevignhsgngrwr
yeavstlkkalsaadiviisilpgslddmevdvhlpercgiyqsvgdtvgpggiirglra
vpifaeiarairdyapeswvinytnpmsvctrvlykvfpgikaigcchevfgtqkllaem
vterlgievprredirvnvlginhftwitkasyrhidllpifrefsahygesgyelegec
wrdsvfcsahrvafdlfetygaipaagdrhlaeflpgpylkqpevwkfhltpisfrkqdr
aekrqeterlivqqrgvaekasgeegvniiaallglgelvtnvnmpnqgqvlnlpiqaiv
etnafitrnrvqpilsgalpkgvemlaarhisnqeavadagltkdtglafqaflndplvq
idrsdaeqlfndml

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3fefD (D:)
msldqikiayigggsqgwarslmsdlsidermsgtvalydldfeaaqknevignhsgngr
wryeavstlkkalsaadiviisilpgslddmevdvhlpercgiyqsvgdtvgpggiirgl
ravpifaeiarairdyapeswvinytnpmsvctrvlykvfpgikaigcchevfgtqklla
emvterlgievprredirvnvlginhftwitkasyrhidllpifrefsahygesgyeleg
ecwrdsvfcsahrvafdlfetygaipaagdrhlaeflpgpylkqpevwkfhltpisfrkq
draekrqeterlivqqrgvaekasgeegvniiaallglgelvtnvnmpnqgqvlnlpiqa
ivetnafitrnrvqpilsgalpkgvemlaarhisnqeavadagltkdtglafqaflndpl
vqidrsdaeqlfndmlqcimqseghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3fefD (D:)
ldqikiayigggsqgwarslmsdlsidermsgtvalydldfeaaqknevignhsgngrwr
yeavstlkkalsaadiviisilpgslddmevdvhlpercgiyqsvgdtvgpggiirglra
vpifaeiarairdyapeswvinytnpmsvctrvlykvfpgikaigcchevfgtqkllaem
vterlgievprredirvnvlginhftwitkasyrhidllpifrefsahygesgyelegec
wrdsvfcsahrvafdlfetygaipaagdrhlaeflpgpylkqpevwkfhltpisfrkqdr
aekrqeterlivqqrgvaekasgeegvniiaallglgelvtnvnmpnqgqvlnlpiqaiv
etnafitrnrvqpilsgalpkgvemlaarhisnqeavadagltkdtglafqaflndplvq
idrsdaeqlfndml