PDB entry 3fdj

View 3fdj on RCSB PDB site
Description: The structure of a DegV family protein from Eubacterium eligens.
Class: structural genomics, unknown function
Keywords: DegV, gut microbiome, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function
Deposited on 2008-11-25, released 2009-02-03
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.162
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DegV family protein
    Species: Eubacterium eligens [TaxId:39485]
    Gene: ASSEMBLY.20070618:0-0:0-0 (zvnW5vjFOAACMF8NLOPRFTmWH60:01:1-275)
    Database cross-references and differences (RAF-indexed):
    • PDB 3FDJ (Start-277)
    Domains in SCOPe 2.06: d3fdja_
  • Heterogens: P6G, EDO, PG4, NA, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3fdjA (A:)
snamrlvadsacdikelrgmvfkavpltistdneefcddgqldihrmldilekhkgrsyt
acpgidawleafgdddeifvvtitagmsgtynsamaaravyleehpqakvrvidskstgp
qmriileqlqqmieegkkfeeidgaidaymqktrlfcslkslhnlaqngrvskvvasaae
vlgisvigtasshgtleaigkcrgdkkllvklqallddagyeggklrichvenealadki
admikqaygttdvcvykagglcsyyaerggiilscetk

    Sequence, based on observed residues (ATOM records): (download) 
    >3fdjA (A:)
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pgidawleafgdddeifvvtitagmsgtynsamaaravyleehpqakvrvidskstgpqm
riileqlqqmieegkkfeeidgaidaymqktrlfcslkslhnlaqngrvskvvasaaevl
gisvigtasshgtleaigkcrgdkkllvklqallddagyeggklrichvenealadkiad
mikqaygttdvcvykagglcsyyaerggiilscetk