PDB entry 3f12
View 3f12 on RCSB PDB site
Description: Germline V-genes sculpt the binding site of a family of antibodies neutralizing human cytomegalovirus
Class: immune system
Keywords: Human cytomegalovirus, antibody, germline, Immunoglobulin domain, IMMUNE SYSTEM
Deposited on
2008-10-27, released
2009-09-15
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-09-15, with a file datestamp of
2009-09-11.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: 0.3
AEROSPACI score: 0.09
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: M2J1 Fab
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3f12a1, d3f12a2 - Chain 'B':
Compound: 8f9 Fab
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: M2J1 Fab
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3f12c1, d3f12c2 - Chain 'D':
Compound: 8f9 Fab
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3f12A (A:)
meivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgip
arfsgsgsgtdftltisslepedfavyycqqrsnwppwtfgqgtkveikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3f12A (A:)
eivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgipa
rfsgsgsgtdftltisslepedfavyycqqrsnwppwtfgqgtkveiktvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnr
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3f12C (C:)
meivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgip
arfsgsgsgtdftltisslepedfavyycqqrsnwppwtfgqgtkveikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3f12C (C:)
eivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgipa
rfsgsgsgtdftltisslepedfavyycqqrsnwppwtfgqgtkveiktvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge
- Chain 'D':
No sequence available.