PDB entry 3eyz

View 3eyz on RCSB PDB site
Description: Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)
Class: transferase/DNA
Keywords: Protein-DNA complex, TRANSFERASE-DNA COMPLEX
Deposited on 2008-10-22, released 2009-11-10
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-03-02, with a file datestamp of 2010-02-26.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.211
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I
    Species: Bacillus stearothermophilus
    Gene: polA
    Database cross-references and differences (RAF-indexed):
    • PDB 3EYZ (0-579)
      • engineered (413)
    Domains in SCOPe 2.06: d3eyza1, d3eyza2
  • Chain 'B':
    Compound: 5'-d(*dcp*dcp*dtp*dgp*dap*dcp*dtp*dcp*dgp*dc)-3'
  • Chain 'C':
    Compound: 5'-d(*dap*dtp*dgp*dcp*dgp*dap*dgp*dtp*dcp*dap*dgp*dgp*da)-3'
  • Heterogens: SUC, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3eyzA (A:)
akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
pdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.