PDB entry 3epw

View 3epw on RCSB PDB site
Description: Crystal structure of Trypanosoma vivax nucleoside hydrolase in complex with the inhibitor (2R,3R,4S)-1-[(4-hydroxy-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-2-(hydroxymethyl)pyrrolidin-3,4-diol
Class: hydrolase
Keywords: Rossmann fold, active site loops, aromatic stacking, Hydrolase
Deposited on 2008-09-30, released 2009-03-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: N/A
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: IAG-nucleoside hydrolase
    Species: Trypanosoma vivax [TaxId:5699]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9GPQ4 (12-337)
      • conflict (311)
    Domains in SCOPe 2.08: d3epwa_
  • Chain 'B':
    Compound: IAG-nucleoside hydrolase
    Species: Trypanosoma vivax [TaxId:5699]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9GPQ4 (12-337)
      • conflict (311)
    Domains in SCOPe 2.08: d3epwb_
  • Heterogens: CA, JMQ, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3epwA (A:)
mrgshhhhhhgsaknvvldhdgnlddfvamvllasntekvrligalctdadcfvengfnv
tgkimclmhnnmnlplfpigksaatavnpfpkewrclaknmddmpilnipenvelwdkik
aenekyegqqlladlvmnseekvticvtgplsnvawcidkygekftskveecvimggavd
vrgnvflpstdgtaewniywdpasaktvfgcpglrrimfsldstntvpvrspyvqrfgeq
tnfllsilvgtmwamcthcellrdgdgyyawdaltaayvvdqkvanvdpvpidvvvdkqp
negatvrtdaenypltfvarnpeaeffldmllrsarac

    Sequence, based on observed residues (ATOM records): (download) 
    >3epwA (A:)
aknvvldhdgnlddfvamvllasntekvrligalctdadcfvengfnvtgkimclmhnnm
nlplfpigksaatavnpfpkewrclaknmddmpilnipenvelwdkikaenekyegqqll
adlvmnseekvticvtgplsnvawcidkygekftskveecvimggavdvrgnvflpstdg
taewniywdpasaktvfgcpglrrimfsldstntvpvrspyvqrfgeqtnfllsilvgtm
wamcthcellrdgdgyyawdaltaayvvdqkvanvdpvpidvvvdkqpnegatvrtdaen
ypltfvarnpeaeffldmllrsarac

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3epwB (B:)
mrgshhhhhhgsaknvvldhdgnlddfvamvllasntekvrligalctdadcfvengfnv
tgkimclmhnnmnlplfpigksaatavnpfpkewrclaknmddmpilnipenvelwdkik
aenekyegqqlladlvmnseekvticvtgplsnvawcidkygekftskveecvimggavd
vrgnvflpstdgtaewniywdpasaktvfgcpglrrimfsldstntvpvrspyvqrfgeq
tnfllsilvgtmwamcthcellrdgdgyyawdaltaayvvdqkvanvdpvpidvvvdkqp
negatvrtdaenypltfvarnpeaeffldmllrsarac

    Sequence, based on observed residues (ATOM records): (download) 
    >3epwB (B:)
aknvvldhdgnlddfvamvllasntekvrligalctdadcfvengfnvtgkimclmhnnm
nlplfpigksaatavnpfpkewrclaknmddmpilnipenvelwdkikaenekyegqqll
adlvmnseekvticvtgplsnvawcidkygekftskveecvimggavdvrgnvflpstdg
taewniywdpasaktvfgcpglrrimfsldstntvpvrspyvqrfgeqtnfllsilvgtm
wamcthcellrdgdgyyawdaltaayvvdqkvanvdpvpidvvvdkqpnegatvrtdaen
ypltfvarnpeaeffldmllrsarac