PDB entry 3eib

View 3eib on RCSB PDB site
Description: Crystal structure of K270N variant of LL-diaminopimelate aminotransferase from Arabidopsis thaliana
Class: transferase
Keywords: aminotransferase, lysine biosynthesis, Pyridoxal 5' phosphate, Arabidopsis thaliana, LL-diaminopimelate, Chloroplast, Pyridoxal phosphate, Transferase, Transit peptide
Deposited on 2008-09-15, released 2008-10-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.164
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LL-diaminopimelate aminotransferase
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DAP, AGD2, At4g33680, T16L1.170
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q93ZN9 (Start-425)
      • engineered (269)
      • expression tag (426-429)
    Domains in SCOPe 2.08: d3eiba1, d3eiba2
  • Chain 'B':
    Compound: LL-diaminopimelate aminotransferase
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DAP, AGD2, At4g33680, T16L1.170
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q93ZN9 (Start-425)
      • engineered (269)
      • expression tag (426-428)
    Domains in SCOPe 2.08: d3eibb1, d3eibb2
  • Heterogens: PLP, SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3eibA (A:)
makrvntckcvatpqekieyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvis
lgigdttepipevitsamakkahelstiegysgygaeqgakplraaiaktfygglgigdd
dvfvsdgakcdisrlqvmfgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygniey
mrctpengffpdlstvgrtdiiffcspnnptgaaatreqltqlvefakkngsiivydsay
amymsddnprsifeipgaeevametasfsnyagftgvrlgwtvipkkllysdgfpvakdf
nriictcfngasnisqagalacltpegleamhkvigfykentniiidtftslgydvyggk
napyvwvhfpnqsswdvfaeilekthvvttpgsgfgpggegfvrvsafghrenileacrr
fkqlykhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3eibA (A:)
eyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvislgigdttepipevitsam
akkahelstiegysgygaeqgakplraaiaktfygglgigdddvfvsdgakcdisrlqvm
fgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygnieymrctpengffpdlstvgr
tdiiffcspnnptgaaatreqltqlvefakkngsiivydsayamymsddnprsifeipga
eevametasfsnyagftgvrlgwtvipkkllysdgfpvakdfnriictcfngasnisqag
alacltpegleamhkvigfykentniiidtftslgydvyggknapyvwvhfpnqsswdvf
aeilekthvvttpgsgfgpggegfvrvsafghrenileacrrfkqlykhhhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3eibB (B:)
makrvntckcvatpqekieyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvis
lgigdttepipevitsamakkahelstiegysgygaeqgakplraaiaktfygglgigdd
dvfvsdgakcdisrlqvmfgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygniey
mrctpengffpdlstvgrtdiiffcspnnptgaaatreqltqlvefakkngsiivydsay
amymsddnprsifeipgaeevametasfsnyagftgvrlgwtvipkkllysdgfpvakdf
nriictcfngasnisqagalacltpegleamhkvigfykentniiidtftslgydvyggk
napyvwvhfpnqsswdvfaeilekthvvttpgsgfgpggegfvrvsafghrenileacrr
fkqlykhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3eibB (B:)
eyktkvsrnsnmsklqagylfpeiarrrsahllkypdaqvislgigdttepipevitsam
akkahelstiegysgygaeqgakplraaiaktfygglgigdddvfvsdgakcdisrlqvm
fgsnvtiavqdpsypayvdssvimgqtgqfntdvqkygnieymrctpengffpdlstvgr
tdiiffcspnnptgaaatreqltqlvefakkngsiivydsayamymsddnprsifeipga
eevametasfsnyagftgvrlgwtvipkkllysdgfpvakdfnriictcfngasnisqag
alacltpegleamhkvigfykentniiidtftslgydvyggknapyvwvhfpnqsswdvf
aeilekthvvttpgsgfgpggegfvrvsafghrenileacrrfkqlykhhh