PDB entry 3edm

View 3edm on RCSB PDB site
Description: Crystal structure of a short chain dehydrogenase from Agrobacterium tumefaciens
Class: oxidoreductase
Keywords: STRUCTURAL GENOMICS, DEHYDROGENASE, Oxidoreductase, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC
Deposited on 2008-09-03, released 2008-09-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Short chain dehydrogenase
    Species: Agrobacterium tumefaciens str. [TaxId:176299]
    Gene: AGR_L_3556, Atu3026
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3edma_
  • Chain 'B':
    Compound: Short chain dehydrogenase
    Species: Agrobacterium tumefaciens str. [TaxId:176299]
    Gene: AGR_L_3556, Atu3026
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3edmb_
  • Chain 'C':
    Compound: Short chain dehydrogenase
    Species: Agrobacterium tumefaciens str. [TaxId:176299]
    Gene: AGR_L_3556, Atu3026
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3edmc_
  • Chain 'D':
    Compound: Short chain dehydrogenase
    Species: Agrobacterium tumefaciens str. [TaxId:176299]
    Gene: AGR_L_3556, Atu3026
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3edmd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3edmA (A:)
mslqrftnrtivvagagrdigracairfaqeganvvltyngaaegaatavaeieklgrsa
laikadltnaaeveaaisaaadkfgeihglvhvaggliarktiaemdeafwhqvldvnlt
slfltaktalpkmakggaivtfssqagrdgggpgalayatskgavmtftrglakevgpki
rvnavcpgmisttfhdtftkpevrervagatslkregssedvaglvaflasddaayvtga
cydinggvlfseghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3edmA (A:)
qrftnrtivvagagrdigracairfaqeganvvltyngaaegaatavaeieklgrsalai
kadltnaaeveaaisaaadkfgeihglvhvaggliarktiaemdeafwhqvldvnltslf
ltaktalpkmakggaivtfssqagrdgggpgalayatskgavmtftrglakevgpkirvn
avcpgmistregssedvaglvaflasddaayvtgacydinggvlfs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3edmB (B:)
mslqrftnrtivvagagrdigracairfaqeganvvltyngaaegaatavaeieklgrsa
laikadltnaaeveaaisaaadkfgeihglvhvaggliarktiaemdeafwhqvldvnlt
slfltaktalpkmakggaivtfssqagrdgggpgalayatskgavmtftrglakevgpki
rvnavcpgmisttfhdtftkpevrervagatslkregssedvaglvaflasddaayvtga
cydinggvlfseghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3edmB (B:)
qrftnrtivvagagrdigracairfaqeganvvltyngaaegaatavaeieklgrsalai
kadltnaaeveaaisaaadkfgeihglvhvaggliarktiaemdeafwhqvldvnltslf
ltaktalpkmakggaivtfssqagrdgggpgalayatskgavmtftrglakevgpkirvn
avcpgmisttregssedvaglvaflasddaayvtgacydinggvlfs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3edmC (C:)
mslqrftnrtivvagagrdigracairfaqeganvvltyngaaegaatavaeieklgrsa
laikadltnaaeveaaisaaadkfgeihglvhvaggliarktiaemdeafwhqvldvnlt
slfltaktalpkmakggaivtfssqagrdgggpgalayatskgavmtftrglakevgpki
rvnavcpgmisttfhdtftkpevrervagatslkregssedvaglvaflasddaayvtga
cydinggvlfseghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3edmC (C:)
qrftnrtivvagagrdigracairfaqeganvvltyngaaegaatavaeieklgrsalai
kadltnaaeveaaisaaadkfgeihglvhvaggliarktiaemdeafwhqvldvnltslf
ltaktalpkmakggaivtfssqagrdgggpgalayatskgavmtftrglakevgpkirvn
avcpgssedvaglvaflasddaayvtgacyding

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3edmD (D:)
mslqrftnrtivvagagrdigracairfaqeganvvltyngaaegaatavaeieklgrsa
laikadltnaaeveaaisaaadkfgeihglvhvaggliarktiaemdeafwhqvldvnlt
slfltaktalpkmakggaivtfssqagrdgggpgalayatskgavmtftrglakevgpki
rvnavcpgmisttfhdtftkpevrervagatslkregssedvaglvaflasddaayvtga
cydinggvlfseghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3edmD (D:)
qrftnrtivvagagrdigracairfaqeganvvltyngaegaatavaeieklgrsalaik
adltnaaeveaaisaaadkfgeihglvhvaggliarktiaemdeafwhqvldvnltslfl
taktalpkmakggaivtfssqagrdgggpgalayatskgavmtftrglakevgpkirvna
vcpgssedvaglvaflasddaayvtgacyding