PDB entry 3ecd

View 3ecd on RCSB PDB site
Description: Crystal structure of serine hydroxymethyltransferase from Burkholderia pseudomallei
Class: transferase
Keywords: SSGCID, deCODE, BupsA00008a, One-carbon metabolism, Pyridoxal phosphate, Transferase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease
Deposited on 2008-08-29, released 2008-09-09
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.188
AEROSPACI score: 0.6 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Serine hydroxymethyltransferase 2
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: glyA2, BPSS0547
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ecda_
  • Chain 'B':
    Compound: Serine hydroxymethyltransferase 2
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: glyA2, BPSS0547
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ecdb_
  • Chain 'C':
    Compound: Serine hydroxymethyltransferase 2
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: glyA2, BPSS0547
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ecdc_
  • Chain 'D':
    Compound: Serine hydroxymethyltransferase 2
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: glyA2, BPSS0547
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ecdd_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ecdA (A:)
smsnanpffsqslaerdasvrgailkelerqqsqveliasenivsravldaqgsvltnky
aegypgkryyggcefadevealaiervkrlfnaghanvqphsgaqangavmlalakpgdt
vlgmsldagghlthgakpalsgkwfnalqygvsrdtmlidydqvealaqqhkpsliiagf
sayprkldfarfraiadsvgaklmvdmahiagviaagrhanpvehahvvtstthktlrgp
rggfvltndeeiakkinsavfpglqggplmhviagkavafgealtddfktyidrvlanaq
algdvlkaggvdlvtggtdnhlllvdlrpkglkgaqveqaleragitcnkngipfdpekp
titsgirlgtpagttrgfgaaefrevgrlilevfealrtnpegdhateqrvrreifalce
rfpiy

    Sequence, based on observed residues (ATOM records): (download) 
    >3ecdA (A:)
nanpffsqslaerdasvrgailkelerqqsqveliasenivsravldaqgsvltnkyaeg
adevealaiervkrlfnaghanvqphsgaqangavmlalakpgdtvlgmslfnalqygvs
rdtmlidydqvealaqqhkpsliiagfsayprkldfarfraiadsvgaklmvdmahiagv
iaagrhanpvehahvvtstthktlrgprggfvltndeeiakkinsavfgplmhviagkav
afgealtddfktyidrvlanaqalgdvlkaggvdlvtggtdnhlllvdlrpkglkgaqve
qaleragitcnkngipfdpekptitsgirlgtpagttrgfgaaefrevgrlilevfealr
tnpegdhateqrvrreifalcerfpiy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ecdB (B:)
smsnanpffsqslaerdasvrgailkelerqqsqveliasenivsravldaqgsvltnky
aegypgkryyggcefadevealaiervkrlfnaghanvqphsgaqangavmlalakpgdt
vlgmsldagghlthgakpalsgkwfnalqygvsrdtmlidydqvealaqqhkpsliiagf
sayprkldfarfraiadsvgaklmvdmahiagviaagrhanpvehahvvtstthktlrgp
rggfvltndeeiakkinsavfpglqggplmhviagkavafgealtddfktyidrvlanaq
algdvlkaggvdlvtggtdnhlllvdlrpkglkgaqveqaleragitcnkngipfdpekp
titsgirlgtpagttrgfgaaefrevgrlilevfealrtnpegdhateqrvrreifalce
rfpiy

    Sequence, based on observed residues (ATOM records): (download) 
    >3ecdB (B:)
nanpffsqslaerdasvrgailkelerqqsqveliasenivsravldaqgsvltnkyaeg
yadevealaiervkrlfnaghanvqphsgaqangavmlalakpgdtvlgmslfnalqygv
srdtmlidydqvealaqqhkpsliiagfsayprkldfarfraiadsvgaklmvdmahiag
viaagrhanpvehahvvtstthktlrgprggfvltndeeiakkinsavfpgplmhviagk
avafgealtddfktyidrvlanaqalgdvlkaggvdlvtggtdnhlllvdlrpkglkgaq
veqaleragitcnkngipfdpekptitsgirlgtpagttrgfgaaefrevgrlilevfea
lrtnpegdhateqrvrreifalcerfpiy

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ecdC (C:)
smsnanpffsqslaerdasvrgailkelerqqsqveliasenivsravldaqgsvltnky
aegypgkryyggcefadevealaiervkrlfnaghanvqphsgaqangavmlalakpgdt
vlgmsldagghlthgakpalsgkwfnalqygvsrdtmlidydqvealaqqhkpsliiagf
sayprkldfarfraiadsvgaklmvdmahiagviaagrhanpvehahvvtstthktlrgp
rggfvltndeeiakkinsavfpglqggplmhviagkavafgealtddfktyidrvlanaq
algdvlkaggvdlvtggtdnhlllvdlrpkglkgaqveqaleragitcnkngipfdpekp
titsgirlgtpagttrgfgaaefrevgrlilevfealrtnpegdhateqrvrreifalce
rfpiy

    Sequence, based on observed residues (ATOM records): (download) 
    >3ecdC (C:)
nanpffsqslaerdasvrgailkelerqqsqveliasenivsravldaqgsvltnkyaeg
ydevealaiervkrlfnaghanvqphsgaqangavmlalakpgdtvlgmslfnalqygvs
rdtmlidydqvealaqqhkpsliiagfsayprkldfarfraiadsvgaklmvdmahiagv
iaagrhanpvehahvvtstthktlrgprggfvltndeeiakkinsavgplmhviagkava
fgealtddfktyidrvlanaqalgdvlkaggvdlvtggtdnhlllvdlrpkglkgaqveq
aleragitcnkngipfdpekptitsgirlgtpagttrgfgaaefrevgrlilevfealrt
npegdhateqrvrreifalcerfpiy

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ecdD (D:)
smsnanpffsqslaerdasvrgailkelerqqsqveliasenivsravldaqgsvltnky
aegypgkryyggcefadevealaiervkrlfnaghanvqphsgaqangavmlalakpgdt
vlgmsldagghlthgakpalsgkwfnalqygvsrdtmlidydqvealaqqhkpsliiagf
sayprkldfarfraiadsvgaklmvdmahiagviaagrhanpvehahvvtstthktlrgp
rggfvltndeeiakkinsavfpglqggplmhviagkavafgealtddfktyidrvlanaq
algdvlkaggvdlvtggtdnhlllvdlrpkglkgaqveqaleragitcnkngipfdpekp
titsgirlgtpagttrgfgaaefrevgrlilevfealrtnpegdhateqrvrreifalce
rfpiy

    Sequence, based on observed residues (ATOM records): (download) 
    >3ecdD (D:)
anpffsqslaerdasvrgailkelerqqsqveliasenivsravldaqgsvltnkyadev
ealaiervkrlfnaghanvqphsgaqangavmlalakpgdtvlgmslfnalqygvsrdtm
lidydqvealaqqhkpsliiagfsayprkldfarfraiadsvgaklmvdmahiagviaag
rhanpvehahvvtstthktlrgprggfvltndeeiakkinsavgplmhviagkavafgea
ltddfktyidrvlanaqalgdvlkaggvdlvtggtdnhlllvdlrpkglkgaqveqaler
agitcnkngipfdpekptitsgirlgtpagttrgfgaaefrevgrlilevfealrtnpeg
dhateqrvrreifalcerfpiy