PDB entry 3ecb
View 3ecb on RCSB PDB site
Description: Crystal structure of mouse H-2Dd in complex with peptide P18-I10 derived from human immunodeficiency virus envelope glycoprotein 120
Class: immune system
Keywords: class I major histompatibility complex, MHC-I, H-2Dd, Glycoprotein, Immune response, Membrane, MHC I, Phosphoprotein, Transmembrane, Immunoglobulin domain, Secreted, AIDS, Apoptosis, Cell membrane, Cleavage on pair of basic residues, Coiled coil, Envelope protein, Fusion protein, Host-virus interaction, Lipoprotein, Palmitate, Viral immunoevasion, Virion, IMMUNE SYSTEM
Deposited on
2008-08-29, released
2009-07-14
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-09-01, with a file datestamp of
2009-08-28.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.184
AEROSPACI score: 0.56
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: H-2 class I histocompatibility antigen, D-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-D1
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2m, RP23-34E24.5-001
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ecbb_ - Chain 'P':
Compound: Peptide P18-I10 from HIV gp160
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: EDO, MG, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3ecbB (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3ecbB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'P':
No sequence available.