PDB entry 3ecb

View 3ecb on RCSB PDB site
Description: Crystal structure of mouse H-2Dd in complex with peptide P18-I10 derived from human immunodeficiency virus envelope glycoprotein 120
Class: immune system
Keywords: class I major histompatibility complex, MHC-I, H-2Dd, Glycoprotein, Immune response, Membrane, MHC I, Phosphoprotein, Transmembrane, Immunoglobulin domain, Secreted, AIDS, Apoptosis, Cell membrane, Cleavage on pair of basic residues, Coiled coil, Envelope protein, Fusion protein, Host-virus interaction, Lipoprotein, Palmitate, Viral immunoevasion, Virion, IMMUNE SYSTEM
Deposited on 2008-08-29, released 2009-07-14
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-09-01, with a file datestamp of 2009-08-28.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.184
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: H-2 class I histocompatibility antigen, D-D alpha chain
  Species: Mus musculus [TaxId:10090]
  Gene: H2-D1
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01900 (1-End)
• Chain 'B':
  Compound: beta-2 microglobulin
  Species: Mus musculus [TaxId:10090]
  Gene: B2m, RP23-34E24.5-001
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q91XJ8 (1-99)
  Domains in SCOPe 2.04: d3ecbb_
• Chain 'P':
  Compound: Peptide P18-I10 from HIV gp160
  Species: synthetic, synthetic
  Database cross-references and differences (RAF-indexed):
  • Uniprot P19551 (0-9)
• Heterogens: EDO, MG, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence, based on SEQRES records: (download)
  

  >3ecbB (B:)
  miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
  wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3ecbB (B:)
  iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
  sfyilahteftptetdtyacrvkhasmaepktvywdrdm
  

  
  
• Chain 'P':
  No sequence available.