PDB entry 3e6h

View 3e6h on RCSB PDB site
Description: MHC CLASS I H-2Dd heavy chain complexed with Beta-2 Microglobulin and a variant peptide, PI10, from the human immunodeficiency virus (BaL) envelope glycoprotein 120
Class: immune system
Keywords: COMPLEX (HISTOCOMPATIBILITY/ANTIGEN), Glycoprotein, Immune response, Membrane, MHC I, Phosphoprotein, Transmembrane, Immunoglobulin domain, Secreted, Envelope protein, IMMUNE SYSTEM
Deposited on 2008-08-15, released 2009-08-18
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-08-18, with a file datestamp of 2009-08-14.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.217
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, D-D alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3e6ha1, d3e6ha2
  • Chain 'B':
    Compound: Putative uncharacterized protein
    Species: Mus musculus [TaxId:10090]
    Gene: B2m, RP23-34E24.5-001
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3e6hb_
  • Chain 'P':
    Compound: Envelope glycoprotein 10-residue peptide
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3e6hA (A:)
    mshslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeyw
    eretrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydg
    cdyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatll
    rtdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpardgt
    fqkwasvvvplgkeqkytchveheglpepltlrwg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3e6hA (A:)
    shslryfvtavsrpgfgeprymevgyvdntefvrfdsdaenpryeprarwieqegpeywe
    retrrakgneqsfrvdlrtalryynqsaggshtlqwmagcdvesdgrllrgywqfaydgc
    dyialnedlktwtaadmaaqitrrkweqagaaerdraylegecvewlrrylkngnatllr
    tdppkahvthhrrpegdvtlrcwalgfypaditltwqlngeeltqemelvetrpardgtf
    qkwasvvvplgkeqkytchveheglpepltlrwg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3e6hB (B:)
    miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
    wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >3e6hB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

  • Chain 'P':
    No sequence available.