PDB entry 3e5n
View 3e5n on RCSB PDB site
Description: Crystal strucutre of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331
Class: ligase
Keywords: Bacterial blight, D-alanine-D-alanine ligase, PIP (Plant-Inducible Promoter) box peptidoglycan biosynthesis Xanthomonas oryzae pv. oryzae, ATP-binding, Cell shape, Cell wall biogenesis/degradation, Cytoplasm, Ligase, Magnesium, Manganese, Metal-binding, Nucleotide-binding, Peptidoglycan synthesis
Deposited on
2008-08-14, released
2009-08-18
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-08-18, with a file datestamp of
2009-08-14.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.199
AEROSPACI score: 0.42
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: D-alanine-D-alanine ligase A
Species: Xanthomonas oryzae pv. oryzae [TaxId:342109]
Gene: XOO0324
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3e5na1, d3e5na2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3e5nA (A:)
mghhhhhhhssenlyfqghmrkirvglifggksaehevslqsarnildaldpqrfepvli
gidkqgqwhvndpdsfllhaddparialhrsgrgvallpgaqqqqlrpiqpeqalaqidv
vfpivhgtlgedgslqgllrmanlpfvgsgvlgsavamdkdmakrvlrdarlavapfvcf
drhtaahadvdtliaqlglplfvkpanqgssvgvsqvrtadafaaalalalaydhkvlve
aavagreiecavlgnavphasvcgevvvhdafysyatkyisehgaeivipadidaqtqqr
iqqiavqayqalgcagmarvdvflcadgrivinevntlpgftrisvypklwqasgldyrg
litrlielalerhtddqllrsavelh
Sequence, based on observed residues (ATOM records): (download)
>3e5nA (A:)
rkirvglifggksaehevslqsarnildaldpqrfepvligidkqgqwhvndpdsfllha
ddparialhrsgrgvallpgaqqqqlrpiqqalaqidvvfpivhgtlgedgslqgllrma
nlpfvgsgvlgsavamdkdmakrvlrdarlavapfvcfdrhtaahadvdtliaqlglplf
vkpanqgssvgvsqvrtadafaaalalalaydhkvlveaavagreiecavlgnavphasv
cgevvveivipadidaqtqqriqqiavqayqalgcagmarvdvflcadgrivinevntlp
gftrisvypklwqasgldyrglitrlielalerhtddqll