PDB entry 3e3q
View 3e3q on RCSB PDB site
Description: Structure of the 3alpham13 high-affinity mutant of the 2C TCR in complex with Ld/QL9
Class: immune system
Keywords: TCR, MHC, high affinity, cross reactivity, Glycoprotein, Immune response, Membrane, MHC I, Phosphoprotein, Transmembrane, Immunoglobulin domain, Receptor, IMMUNE SYSTEM
Deposited on
2008-08-07, released
2008-11-04
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: 0.25
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: H-2 class I histocompatibility antigen, L-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-L
Database cross-references and differences (RAF-indexed):
- Uniprot P01897 (0-174)
- engineered (7)
- engineered (11)
- engineered (14)
- engineered (22)
- engineered (29)
- engineered (48)
- engineered (65)
- engineered (96)
- engineered (130)
- Chain 'B':
Compound: H-2 class I histocompatibility antigen, L-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-L
Database cross-references and differences (RAF-indexed):
- Uniprot P01897 (0-174)
- engineered (7)
- engineered (11)
- engineered (14)
- engineered (22)
- engineered (29)
- engineered (48)
- engineered (65)
- engineered (96)
- engineered (130)
- Chain 'C':
Compound: T-cell receptor alpha chain V region PHDS58
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01738 (0-108)
- engineered (41)
- engineered (80)
- engineered (92-96)
Domains in SCOPe 2.02: d3e3qc_ - Chain 'D':
Compound: T-cell receptor alpha chain V region PHDS58
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01738 (0-108)
- engineered (41)
- engineered (80)
- engineered (92-96)
- Chain 'E':
Compound: TCR beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3e3qe_ - Chain 'F':
Compound: TCR beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3e3qf_ - Chain 'G':
Compound: QL9 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: H-2 class I histocompatibility antigen, L-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-L
Database cross-references and differences (RAF-indexed):
- Uniprot P01897 (0-174)
- engineered (7)
- engineered (11)
- engineered (14)
- engineered (22)
- engineered (29)
- engineered (48)
- engineered (65)
- engineered (96)
- engineered (130)
- Chain 'I':
Compound: T-cell receptor alpha chain V region PHDS58
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01738 (0-108)
- engineered (41)
- engineered (80)
- engineered (92-96)
- Chain 'J':
Compound: TCR beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3e3qj_ - Chain 'K':
Compound: QL9 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: H-2 class I histocompatibility antigen, L-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-L
Database cross-references and differences (RAF-indexed):
- Uniprot P01897 (0-174)
- engineered (7)
- engineered (11)
- engineered (14)
- engineered (22)
- engineered (29)
- engineered (48)
- engineered (65)
- engineered (96)
- engineered (130)
- Chain 'M':
Compound: T-cell receptor alpha chain V region PHDS58
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01738 (0-108)
- engineered (41)
- engineered (80)
- engineered (92-96)
- Chain 'N':
Compound: TCR beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3e3qn_ - Chain 'O':
Compound: QL9 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: H-2 class I histocompatibility antigen, L-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-L
Database cross-references and differences (RAF-indexed):
- Uniprot P01897 (0-174)
- engineered (7)
- engineered (11)
- engineered (14)
- engineered (22)
- engineered (29)
- engineered (48)
- engineered (65)
- engineered (96)
- engineered (130)
- Chain 'Q':
Compound: QL9 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'R':
Compound: T-cell receptor alpha chain V region PHDS58
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01738 (0-108)
- engineered (41)
- engineered (80)
- engineered (92-96)
- Chain 'S':
Compound: TCR beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3e3qs_ - Chain 'T':
Compound: QL9 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'U':
Compound: H-2 class I histocompatibility antigen, L-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-L
Database cross-references and differences (RAF-indexed):
- Uniprot P01897 (0-174)
- engineered (7)
- engineered (11)
- engineered (14)
- engineered (22)
- engineered (29)
- engineered (48)
- engineered (65)
- engineered (96)
- engineered (130)
- Chain 'V':
Compound: T-cell receptor alpha chain V region PHDS58
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01738 (0-108)
- engineered (41)
- engineered (80)
- engineered (92-96)
- Chain 'W':
Compound: TCR beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3e3qw_ - Chain 'X':
Compound: QL9 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'Y':
Compound: H-2 class I histocompatibility antigen, L-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-L
Database cross-references and differences (RAF-indexed):
- Uniprot P01897 (0-174)
- engineered (7)
- engineered (11)
- engineered (14)
- engineered (22)
- engineered (29)
- engineered (48)
- engineered (65)
- engineered (96)
- engineered (130)
- Chain 'Z':
Compound: T-cell receptor alpha chain V region PHDS58
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01738 (0-108)
- engineered (41)
- engineered (80)
- engineered (92-96)
- Chain 'a':
Compound: TCR beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3e3qa_ - Chain 'b':
Compound: QL9 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'c':
Compound: H-2 class I histocompatibility antigen, L-D alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-L
Database cross-references and differences (RAF-indexed):
- Uniprot P01897 (0-174)
- engineered (7)
- engineered (11)
- engineered (14)
- engineered (22)
- engineered (29)
- engineered (48)
- engineered (65)
- engineered (96)
- engineered (130)
- Chain 'd':
Compound: T-cell receptor alpha chain V region PHDS58
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot P01738 (0-108)
- engineered (41)
- engineered (80)
- engineered (92-96)
- Chain 'e':
Compound: TCR beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'f':
Compound: QL9 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3e3qC (C:)
svtqpdarvtvsegaslqlrckysysatpylfwyvqyprqgpqlllkyysgdpvvqgvng
feaefsksnssfhlrkasvhrsdsavyfcavsdppplltfgsgtkvivl
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3e3qE (E:)
eaavtqsprnkvavtgekvtlscnqtnnhnnmywyrqdtghelrliyysygagstekgdi
pdgykasrpsqenfsltlesatpsqtsvyfcasggggtlyfgagtrlsvls
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>3e3qF (F:)
eaavtqsprnkvavtgekvtlscnqtnnhnnmywyrqdtghelrliyysygagstekgdi
pdgykasrpsqenfsltlesatpsqtsvyfcasggggtlyfgagtrlsvls
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>3e3qJ (J:)
eaavtqsprnkvavtgekvtlscnqtnnhnnmywyrqdtghelrliyysygagstekgdi
pdgykasrpsqenfsltlesatpsqtsvyfcasggggtlyfgagtrlsvls
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.
- Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)
>3e3qN (N:)
eaavtqsprnkvavtgekvtlscnqtnnhnnmywyrqdtghelrliyysygagstekgdi
pdgykasrpsqenfsltlesatpsqtsvyfcasggggtlyfgagtrlsvls
- Chain 'O':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.
- Chain 'R':
No sequence available.
- Chain 'S':
Sequence; same for both SEQRES and ATOM records: (download)
>3e3qS (S:)
eaavtqsprnkvavtgekvtlscnqtnnhnnmywyrqdtghelrliyysygagstekgdi
pdgykasrpsqenfsltlesatpsqtsvyfcasggggtlyfgagtrlsvls
- Chain 'T':
No sequence available.
- Chain 'U':
No sequence available.
- Chain 'V':
No sequence available.
- Chain 'W':
Sequence; same for both SEQRES and ATOM records: (download)
>3e3qW (W:)
eaavtqsprnkvavtgekvtlscnqtnnhnnmywyrqdtghelrliyysygagstekgdi
pdgykasrpsqenfsltlesatpsqtsvyfcasggggtlyfgagtrlsvls
- Chain 'X':
No sequence available.
- Chain 'Y':
No sequence available.
- Chain 'Z':
No sequence available.
- Chain 'a':
Sequence; same for both SEQRES and ATOM records: (download)
>3e3qa (a:)
eaavtqsprnkvavtgekvtlscnqtnnhnnmywyrqdtghelrliyysygagstekgdi
pdgykasrpsqenfsltlesatpsqtsvyfcasggggtlyfgagtrlsvls
- Chain 'b':
No sequence available.
- Chain 'c':
No sequence available.
- Chain 'd':
No sequence available.
- Chain 'e':
No sequence available.
- Chain 'f':
No sequence available.