PDB entry 3e1j
View 3e1j on RCSB PDB site
Description: Crystal structure of E. coli Bacterioferritin (BFR) with an unoccupied ferroxidase centre (APO-BFR).
Class: metal binding protein
Keywords: rhombic dodecahedral superstructure. apo-bfr., heme, iron, iron storage, metal-binding, metal binding protein
Deposited on
2008-08-04, released
2009-05-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-05-26, with a file datestamp of
2009-05-22.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.243
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1ja_ - Chain 'B':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jb_ - Chain 'C':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jc_ - Chain 'D':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jd_ - Chain 'E':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1je_ - Chain 'F':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jf_ - Chain 'G':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jg_ - Chain 'H':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jh_ - Chain 'I':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1ji_ - Chain 'J':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jj_ - Chain 'K':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jk_ - Chain 'L':
Compound: bacterioferritin
Species: Escherichia coli K12 [TaxId:83333]
Gene: bfr, b3336, JW3298
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3e1jl_ - Heterogens: SO4, HEM, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jA (A:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jB (B:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jC (C:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jD (D:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jE (E:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jF (F:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jG (G:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jH (H:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jI (I:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jJ (J:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jK (K:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>3e1jL (L:)
mkgdtkvinylnkllgnelvainqyflharmfknwglkrlndveyhesidemkhadryie
rilfleglpnlqdlgklnigedveemlrsdlaleldgaknlreaigyadsvhdyvsrdmm
ieilrdeeghidwleteldliqkmglqnylqaqireeg