PDB entry 3dx8

View 3dx8 on RCSB PDB site
Description: Crystal Structure of B*4405 presenting a 10mer EBV epitope
Class: immune system
Keywords: MHC, Glycoprotein, Glycation, Host-virus interaction, Immune response, Membrane, MHC I, Transmembrane, Pyrrolidone carboxylic acid, Disease mutation, IMMUNE SYSTEM
Deposited on 2008-07-23, released 2009-01-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility complex HLA-B*4405
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-B, HLAB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P30481 (0-275)
      • engineered (115)
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3dx8b_
  • Chain 'C':
    Compound: EBV decapeptide epitope
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3dx8B (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.