PDB entry 3dwk

View 3dwk on RCSB PDB site
Description: Identification of Dynamic Structural Motifs Involved in Peptidoglycan Glycosyltransfer
Class: transferase
Keywords: lysozyme-fold transpeptidase fold pi-helix, Cell shape, Cell wall biogenesis/degradation, Membrane, Peptidoglycan synthesis, TRANSFERASE
Deposited on 2008-07-22, released 2008-09-30
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-08-18, with a file datestamp of 2009-08-14.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.218
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Penicillin-binding protein 2
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: pbp2, SACOL1490
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3dwka1, d3dwka2
  • Chain 'B':
    Compound: Penicillin-binding protein 2
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: pbp2, SACOL1490
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3dwkb1, d3dwkb2
  • Chain 'C':
    Compound: Penicillin-binding protein 2
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: pbp2, SACOL1490
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3dwkc1, d3dwkc2
  • Chain 'D':
    Compound: Penicillin-binding protein 2
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: pbp2, SACOL1490
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3dwkd1, d3dwkd2
  • Heterogens: SO4, LDA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dwkA (A:)
mlqdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldyk
rlfgaigknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddi
fqvylnkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaae
drkntvlylmhyhkritdkqwedakkidlkanlvnrtpeerqnidtnqdseynsyvnfvk
selmnnkafkdenlgnvlqsgikiytnmdkdvqktlqndvdngsfyknkdqqvgatilds
ktgglvaisggrdfkdvvnrnqatdphptgsslkpflaygpaienmkwatnhaiqdessy
qvdgstfrnydtkshgtvsiydalrqsfnipalkawqsvkqnagndapkkfaaklglnye
gdigpsevlggsasefsptqlasafaaianggtynnahsiqkvvtrdgetieydhtshka
msdytaymlaemlkgtfkpygsayghgvsgvnmgaktgtgtygaetysqynlpdnaakdv
wingftpqytmsvwmgfskvkqygensfvghsqqeypqflyenvmskissrdgedfkrps
svsgsipsinvsgsqdnnttnrsth

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwkA (A:)
dpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldykrlf
gstltqqvvkdaflsigrkaqeaylsyrleqeyskddifqvylnkiyysdgvtgikaaak
yyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaaedrkntvlylmhyhkritdkqwe
dakkidlkanlvnrtpeerqndseynsyvnfvkselmnnkafkdenlgnvlqsgikiytn
mdkdvqktlqndvdngsfyknkdqqvgatildsktgglvaisggrdfkdvvnrnqatdph
ptgsslkpflaygpaienmkwatnhaiqdessyqvdgstfrnydtkshgtvsiydalrqs
fnipalkawqsvkqnagndapkkfaaklglnyegdigpsevlggsasefsptqlasafaa
ianggtynnahsiqkvvtrdgetieydhtshkamsdytaymlaemlkgtfkpygsayghg
vsgvnmgaktgtgtygaetysqynlpdnaakdvwingftpqytmsvwmgfskvkqygens
fvghsqqeypqflyenvmskissrdgedfkrpssvsgsipsinvsgsqdnnttnrsth

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dwkB (B:)
mlqdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldyk
rlfgaigknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddi
fqvylnkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaae
drkntvlylmhyhkritdkqwedakkidlkanlvnrtpeerqnidtnqdseynsyvnfvk
selmnnkafkdenlgnvlqsgikiytnmdkdvqktlqndvdngsfyknkdqqvgatilds
ktgglvaisggrdfkdvvnrnqatdphptgsslkpflaygpaienmkwatnhaiqdessy
qvdgstfrnydtkshgtvsiydalrqsfnipalkawqsvkqnagndapkkfaaklglnye
gdigpsevlggsasefsptqlasafaaianggtynnahsiqkvvtrdgetieydhtshka
msdytaymlaemlkgtfkpygsayghgvsgvnmgaktgtgtygaetysqynlpdnaakdv
wingftpqytmsvwmgfskvkqygensfvghsqqeypqflyenvmskissrdgedfkrps
svsgsipsinvsgsqdnnttnrsth

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwkB (B:)
dpipakiydkngelvktldgqrhehvnlkdvpksmkdavlatednrfyehgaldykrlfg
aigknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddifqvy
lnkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaaedrkn
tvlylmhyhkritdkqwedakkidlkanlvnrtpeerqnidtnqdseynsyvnfvkselm
nnkafkdenlgnvlqsgikiytnmdkdvqktlqndvdngsfyknkdqqvgatildsktgg
lvaisggrdfkdvvnrnqatdphptgsslkpflaygpaienmkwatnhaiqdessyqvdg
stfrnydtkshgtvsiydalrqsfnipalkawqsvkqnagndapkkfaaklglnyegdig
psevlggsasefsptqlasafaaianggtynnahsiqkvvtrdgetieydhtshkamsdy
taymlaemlkgtfkpygsayghgvsgvnmgaktgtgtygaetysqynlpdnaakdvwing
ftpqytmsvwmgfskvkqygensfvghsqqeypqflyenvmskissrdgedfkrpssvsg
sipsinvsgsqdnnttnrsth

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dwkC (C:)
mlqdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldyk
rlfgaigknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddi
fqvylnkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaae
drkntvlylmhyhkritdkqwedakkidlkanlvnrtpeerqnidtnqdseynsyvnfvk
selmnnkafkdenlgnvlqsgikiytnmdkdvqktlqndvdngsfyknkdqqvgatilds
ktgglvaisggrdfkdvvnrnqatdphptgsslkpflaygpaienmkwatnhaiqdessy
qvdgstfrnydtkshgtvsiydalrqsfnipalkawqsvkqnagndapkkfaaklglnye
gdigpsevlggsasefsptqlasafaaianggtynnahsiqkvvtrdgetieydhtshka
msdytaymlaemlkgtfkpygsayghgvsgvnmgaktgtgtygaetysqynlpdnaakdv
wingftpqytmsvwmgfskvkqygensfvghsqqeypqflyenvmskissrdgedfkrps
svsgsipsinvsgsqdnnttnrsth

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwkC (C:)
qdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldykrl
fgaigknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddifq
vylnkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaaedr
kntvlylmhyhkritdkqwedakkidlkanlvnrtpeerqnidtnqdseynsyvnfvkse
lmnnkafkdenlgnvlqsgikiytnmdkdvqktlqndvdngsfyknkdqqvgatildskt
gglvaisggrdfkdvvnrnqatdphptgsslkpflaygpaienmkwatnhaiqdessyqv
dgstfrnydtkshgtvsiydalrqsfnipalkawqsvkqnagndapkkfaaklglnyegd
igpsevlggsasefsptqlasafaaianggtynnahsiqkvvtrdgetieydhtshkams
dytaymlaemlkgtfkpygsayghgvsgvnmgaktgtgtygaetysqynlpdnaakdvwi
ngftpqytmsvwmgfskvkqygensfvghsqqeypqflyenvmskissrdgedfkrpssv
sgsipsinvsgsqdnnttnrsth

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3dwkD (D:)
mlqdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldyk
rlfgaigknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddi
fqvylnkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaae
drkntvlylmhyhkritdkqwedakkidlkanlvnrtpeerqnidtnqdseynsyvnfvk
selmnnkafkdenlgnvlqsgikiytnmdkdvqktlqndvdngsfyknkdqqvgatilds
ktgglvaisggrdfkdvvnrnqatdphptgsslkpflaygpaienmkwatnhaiqdessy
qvdgstfrnydtkshgtvsiydalrqsfnipalkawqsvkqnagndapkkfaaklglnye
gdigpsevlggsasefsptqlasafaaianggtynnahsiqkvvtrdgetieydhtshka
msdytaymlaemlkgtfkpygsayghgvsgvnmgaktgtgtygaetysqynlpdnaakdv
wingftpqytmsvwmgfskvkqygensfvghsqqeypqflyenvmskissrdgedfkrps
svsgsipsinvsgsqdnnttnrsth

    Sequence, based on observed residues (ATOM records): (download) 
    >3dwkD (D:)
ipakiydkngelvktldrhehvnlkdvpksmkdavlatednrfyehgaldykrlfastlt
qqvvkdaflsqhksigrkaqeaylsyrleqeyskddifqvylnkiyysdgvtgikaaaky
yfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaaedrkntvlylmhyhkritdkqwed
akkidlkanlvnrtpeerqnidtnqdseynsyvnfvkselmnnkafkdenlgnvlqsgik
iytnmdkdvqktlqndvdngsfyknkdqqvgatildsktgglvaisggrdfkdvvnrnqa
tdphptgsslkpflaygpaienmkwatnhaiqdessyqvdgstfrnydtkshgtvsiyda
lrqsfnipalkawqsvkqnagndapkkfaaklglnyegdigpsevlggsasefsptqlas
afaaianggtynnahsiqkvvtrdgetieydhtshkamsdytaymlaemlkgtfkpygsa
yghgvsgvnmgaktgtgtygaetysqynlpdnaakdvwingftpqytmsvwmgfskvkqy
gensfvghsqqeypqflyenvmskissrdgedfkrpssvsgsipsinvsgsqdnnttnrs
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