PDB entry 3dv4

View 3dv4 on RCSB PDB site
Description: Crystal structure of SAG506-01, tetragonal, crystal 1
Class: immune system
Keywords: antibody, KDO, twinning, pseudo-symmetry, IMMUNE SYSTEM
Deposited on 2008-07-18, released 2008-12-02
The last revision prior to the SCOPe 2.05 freeze date was dated 2008-12-02, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.272
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: antibody Fv fragment SAG506-01
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DV4 (0-111)
    Domains in SCOPe 2.05: d3dv4a_
  • Chain 'B':
    Compound: Ig-like protein
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3DV4 (0-120)
    Domains in SCOPe 2.05: d3dv4b_
  • Heterogens: KDO, MG, PG4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3dv4A (A:)
divltqspsslavsagervtmsckssqslfksrnqknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltingvqaedlavyyckqsynlrtfgggtklelk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dv4B (B:)
evklvesggglvqpggslrlscatsgftftdyymswvrqppgkalewlgfirnkakgytv
eysasvkgrftisrdnsqsilylqmntlraedsatyycardgyyvdamdywgqgtsvtvs
s

    Sequence, based on observed residues (ATOM records): (download) 
    >3dv4B (B:)
evklvesggglvqpggslrlscatsgftftdyymswvrqppgkalewlgfirnkakgytv
eysasvkgrftisrdnsqsilylqmntaedsatyycardgyyvdamdywgqgtsvtvss