PDB entry 3ds5

View 3ds5 on RCSB PDB site
Description: HIV-1 capsid C-terminal domain mutant (N183A)
Class: viral protein
Keywords: hiv, capsid, mutant, assembly, polyprotein, mainly alpha, viral protein
Deposited on 2008-07-11, released 2008-09-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hiv-1 capsid protein
    Species: Human immunodeficiency virus 1 [TaxId:11698]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497
      • engineered (37)
    Domains in SCOPe 2.08: d3ds5a_
  • Chain 'B':
    Compound: hiv-1 capsid protein
    Species: Human immunodeficiency virus 1 [TaxId:11698]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497
      • engineered (37)
    Domains in SCOPe 2.08: d3ds5b_
  • Chain 'C':
    Compound: hiv-1 capsid protein
    Species: Human immunodeficiency virus 1 [TaxId:11698]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497
      • engineered (37)
    Domains in SCOPe 2.08: d3ds5c_
  • Chain 'D':
    Compound: hiv-1 capsid protein
    Species: Human immunodeficiency virus 1 [TaxId:11698]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497
      • engineered (37)
    Domains in SCOPe 2.08: d3ds5d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ds5A (A:)
sptsildirqgpkepfrdyvdrfyktlraeqasqevkawmtetllvqnanpdcktilkal
gpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >3ds5A (A:)
sildirqgpkepfrdyvdrfyktlraeqasqevkawmtetllvqnanpdcktilkalgpg
atleemmtacqgv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ds5B (B:)
sptsildirqgpkepfrdyvdrfyktlraeqasqevkawmtetllvqnanpdcktilkal
gpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >3ds5B (B:)
sildirqgpkepfrdyvdrfyktlraeqasqevkawmtetllvqnanpdcktilkalgpg
atleemmtacqgv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ds5C (C:)
sptsildirqgpkepfrdyvdrfyktlraeqasqevkawmtetllvqnanpdcktilkal
gpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >3ds5C (C:)
sildirqgpkepfrdyvdrfyktlraeqasqevkawmtetllvqnanpdcktilkalgpg
atleemmtacqgv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ds5D (D:)
sptsildirqgpkepfrdyvdrfyktlraeqasqevkawmtetllvqnanpdcktilkal
gpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >3ds5D (D:)
sildirqgpkepfrdyvdrfyktlraeqasqevkawmtetllvqnanpdcktilkalgpg
atleemmtacqgv