PDB entry 3dmm

View 3dmm on RCSB PDB site
Description: Crystal structure of the CD8 alpha beta/H-2Dd complex
Class: immune system
Keywords: T cell co-receptor CD8ab MHC complex, Glycoprotein, Immune response, Membrane, MHC I, Phosphoprotein, Transmembrane, Immunoglobulin domain, Secreted, Envelope protein, Alternative splicing, Polymorphism, IMMUNE SYSTEM
Deposited on 2008-07-01, released 2009-07-14
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-08-18, with a file datestamp of 2009-08-14.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.248
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: H-2 class I histocompatibility antigen, D-D alpha chain
  Species: Mus musculus [TaxId:10090]
  Gene: H2-D1
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01900 (1-274)
• Chain 'B':
  Compound: beta-2 microglobulin
  Species: Mus musculus [TaxId:10090]
  Gene: B2M
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q91XJ8 (1-99)
    • expression tag (0)
  Domains in SCOPe 2.03: d3dmmb_
• Chain 'C':
  Compound: T-cell surface glycoprotein CD8 alpha chain
  Species: Mus musculus [TaxId:10090]
  Gene: Cd8a, Lyt-2, Lyt2
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01731
• Chain 'D':
  Compound: T-cell surface glycoprotein CD8 beta chain
  Species: Mus musculus [TaxId:10090]
  Gene: Cd8b, Cd8b1, Ly-3, Lyt-3, Lyt3
  Database cross-references and differences (RAF-indexed):
  • Uniprot P10300
• Chain 'P':
  Compound: synthetic peptide
  Species: synthetic, synthetic
  Database cross-references and differences (RAF-indexed):
  • PDB 3DMM (0-9)
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3dmmB (B:)
  miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
  wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'P':
  No sequence available.