PDB entry 3dmm

View 3dmm on RCSB PDB site
Description: Crystal structure of the CD8 alpha beta/H-2Dd complex
Class: immune system
Keywords: T cell co-receptor CD8ab MHC complex, Glycoprotein, Immune response, Membrane, MHC I, Phosphoprotein, Transmembrane, Immunoglobulin domain, Secreted, Envelope protein, Alternative splicing, Polymorphism, IMMUNE SYSTEM
Deposited on 2008-07-01, released 2009-07-14
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-08-18, with a file datestamp of 2009-08-14.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.248
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, D-D alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: beta-2 microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q91XJ8 (1-99)
      • expression tag (0)
    Domains in SCOPe 2.02: d3dmmb_
  • Chain 'C':
    Compound: T-cell surface glycoprotein CD8 alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: Cd8a, Lyt-2, Lyt2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: T-cell surface glycoprotein CD8 beta chain
    Species: Mus musculus [TaxId:10090]
    Gene: Cd8b, Cd8b1, Ly-3, Lyt-3, Lyt3
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: synthetic peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3DMM (0-9)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3dmmB (B:)
    miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
    wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'P':
    No sequence available.