PDB entry 3dfh

View 3dfh on RCSB PDB site
Description: crystal structure of putative mandelate racemase / muconate lactonizing enzyme from Vibrionales bacterium SWAT-3
Class: isomerase
Keywords: STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, putative mandelate racemase / muconate lactonizing enzyme, PSI-2, New York SGX Research Center for Structural Genomics, ISOMERASE
Deposited on 2008-06-12, released 2008-07-01
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.176
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mandelate racemase
    Species: Vibrionales bacterium [TaxId:391574]
    Gene: VSWAT3_13707
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5KUH4 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.06: d3dfha1, d3dfha2, d3dfha3
  • Chain 'B':
    Compound: mandelate racemase
    Species: Vibrionales bacterium [TaxId:391574]
    Gene: VSWAT3_13707
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5KUH4 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.06: d3dfhb1, d3dfhb2, d3dfhb3
  • Chain 'C':
    Compound: mandelate racemase
    Species: Vibrionales bacterium [TaxId:391574]
    Gene: VSWAT3_13707
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5KUH4 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.06: d3dfhc1, d3dfhc2, d3dfhc3
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dfhA (A:)
mslketiisdihciitkpdrhnlitvvvetnegvtgfgcatfqqrplavktmvdeylkpi
ligknanniedlwqmmmvnaywrngpvinnaisgvdmalwdikaklagmplhqlfggksr
daipvythatsdtmegiydlvegflekgykhircqlgfyggvptdlhttqnptegsyydq
dqymdntltmfkslrekygnqfhilhdvherlfpnqaiqfakeveqykpyfiedilppnq
tewldnirsqssvslglgelfnnpeewkslianrridfirchvsqiggitpalklghlcq
nfgvriawhcppdmtpigaavnthlnvhlhnaaiqehveyngnthkvfpnaaepingyly
aseiagigveidreaaaefpvmyrpheghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dfhA (A:)
slketiisdihciitkpdrhnlitvvvetnegvtgfgcatfqqrplavktmvdeylkpil
igknanniedlwqmmmvnaywrngpvinnaisgvdmalwdikaklagmplhqlfggksrd
aipvythatsdtmegiydlvegflekgykhircqlgfdqdqymdntltmfkslrekygnq
fhilhdvherlfpnqaiqfakeveqykpyfiedilppnqtewldnirsqssvslglgelf
nnpeewkslianrridfirchvsqiggitpalklghlcqnfgvriawhcppdmtpigaav
nthlnvhlhnaaiqehveyngnthkvfpnaaepingylyaseiagigveidreaaaefp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3dfhB (B:)
mslketiisdihciitkpdrhnlitvvvetnegvtgfgcatfqqrplavktmvdeylkpi
ligknanniedlwqmmmvnaywrngpvinnaisgvdmalwdikaklagmplhqlfggksr
daipvythatsdtmegiydlvegflekgykhircqlgfyggvptdlhttqnptegsyydq
dqymdntltmfkslrekygnqfhilhdvherlfpnqaiqfakeveqykpyfiedilppnq
tewldnirsqssvslglgelfnnpeewkslianrridfirchvsqiggitpalklghlcq
nfgvriawhcppdmtpigaavnthlnvhlhnaaiqehveyngnthkvfpnaaepingyly
aseiagigveidreaaaefpvmyrpheghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dfhB (B:)
slketiisdihciitkpdrhnlitvvvetnegvtgfgcatfqqrplavktmvdeylkpil
igknanniedlwqmmmvnaywrngpvinnaisgvdmalwdikaklagmplhqlfggksrd
aipvythatsdtmegiydlvegflekgykhircqlgfdqdqymdntltmfkslrekygnq
fhilhdvherlfpnqaiqfakeveqykpyfiedilppnqtewldnirsqssvslglgelf
nnpeewkslianrridfirchvsqiggitpalklghlcqnfgvriawhcppdmtpigaav
nthlnvhlhnaaiqehveyngnthkvfpnaaepingylyaseiagigveidreaaaefp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3dfhC (C:)
mslketiisdihciitkpdrhnlitvvvetnegvtgfgcatfqqrplavktmvdeylkpi
ligknanniedlwqmmmvnaywrngpvinnaisgvdmalwdikaklagmplhqlfggksr
daipvythatsdtmegiydlvegflekgykhircqlgfyggvptdlhttqnptegsyydq
dqymdntltmfkslrekygnqfhilhdvherlfpnqaiqfakeveqykpyfiedilppnq
tewldnirsqssvslglgelfnnpeewkslianrridfirchvsqiggitpalklghlcq
nfgvriawhcppdmtpigaavnthlnvhlhnaaiqehveyngnthkvfpnaaepingyly
aseiagigveidreaaaefpvmyrpheghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3dfhC (C:)
slketiisdihciitkpdrhnlitvvvetnegvtgfgcatfqqrplavktmvdeylkpil
igknanniedlwqmmmvnaywrngpvinnaisgvdmalwdikaklagmplhqlfggksrd
aipvythatsdtmegiydlvegflekgykhircqlgfdqdqymdntltmfkslrekygnq
fhilhdvherlfpnqaiqfakeveqykpyfiedilppnqtewldnirsqssvslglgelf
nnpeewkslianrridfirchvsqiggitpalklghlcqnfgvriawhcppdmtpigaav
nthlnvhlhnaaiqehveyngnthkvfpnaaepingylyaseiagigveidreaaaefp