PDB entry 3d9e

View 3d9e on RCSB PDB site
Description: Nitroalkane oxidase: active site mutant D402N crystallized with 1-nitrooctane
Class: oxidoreductase
Keywords: oxidoreductase, flavoenzyme, nitroalkane, acyl-coa dehydrogenase, long cell edge, fad, inhibitor, flavoprotein
Deposited on 2008-05-27, released 2009-04-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nitroalkane oxidase
    Species: FUSARIUM OXYSPORUM [TaxId:5507]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8X1D8 (0-End)
      • engineered (400)
    Domains in SCOPe 2.08: d3d9ea1, d3d9ea2
  • Chain 'B':
    Compound: nitroalkane oxidase
    Species: FUSARIUM OXYSPORUM [TaxId:5507]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8X1D8 (0-End)
      • engineered (400)
    Domains in SCOPe 2.08: d3d9eb1, d3d9eb2
  • Chain 'C':
    Compound: nitroalkane oxidase
    Species: FUSARIUM OXYSPORUM [TaxId:5507]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8X1D8 (0-End)
      • engineered (400)
    Domains in SCOPe 2.08: d3d9ec1, d3d9ec2
  • Chain 'D':
    Compound: nitroalkane oxidase
    Species: FUSARIUM OXYSPORUM [TaxId:5507]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8X1D8 (0-End)
      • engineered (400)
    Domains in SCOPe 2.08: d3d9ed1, d3d9ed2
  • Heterogens: FAD, N8C, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d9eA (A:)
vdfklspsqlearrhaqafantvltkasaeystqkdqlsrfqatrpfyreavrhglikaq
vpiplggtmeslvhesiileelfavepatsitivatalglmpvilcdspslqekflkpfi
sgegeplaslmhsepngtanwlqkggpglqttarkvgnewvisgeklwpsnsggwdykga
dlacvvcrvsddpskpqdpnvdpatqiavllvtretiannkkdayqilgepelaghitts
gphtrftefhvphenllctpglkaqglvetafamsaalvgamaigtaraafeealvfaks
dtrggskhiiehqsvadklidckirletsrllvwkavttledealewkvklemamqtkiy
ttdvavecvidamkavgmksyakdmsfprllnevmcyplfnggniglrrrqmqrvmaled
yepwaatygsskvdksrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3d9eA (A:)
vdfklspsqlearrhaqafantvltkasaeystqkdqlsrfqatrpfyreavrhglikaq
vpiplggtmeslvhesiileelfavepatsitivatalglmpvilcdspslqekflkpfi
sgegeplaslmhsepngtanwlqkggpglqttarkvgnewvisgeklwpsnsggwdykga
dlacvvcrvsddpskpqdpnvdpatqiavllvtretiannkkdayqilgepelaghitts
gphtrftefhvphenllctpglkaqglvetafamsaalvgamaigtaraafeealvfaks
dtrggskhiiehqsvadklidckirletsrllvwkavttledealewkvklemamqtkiy
ttdvavecvidamkavgmksyakdmsfprllnevmcyplfnggniglrrrqmqrvmaled
yepwaatygss

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d9eB (B:)
vdfklspsqlearrhaqafantvltkasaeystqkdqlsrfqatrpfyreavrhglikaq
vpiplggtmeslvhesiileelfavepatsitivatalglmpvilcdspslqekflkpfi
sgegeplaslmhsepngtanwlqkggpglqttarkvgnewvisgeklwpsnsggwdykga
dlacvvcrvsddpskpqdpnvdpatqiavllvtretiannkkdayqilgepelaghitts
gphtrftefhvphenllctpglkaqglvetafamsaalvgamaigtaraafeealvfaks
dtrggskhiiehqsvadklidckirletsrllvwkavttledealewkvklemamqtkiy
ttdvavecvidamkavgmksyakdmsfprllnevmcyplfnggniglrrrqmqrvmaled
yepwaatygsskvdksrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3d9eB (B:)
vdfklspsqlearrhaqafantvltkasaeystqkdqlsrfqatrpfyreavrhglikaq
vpiplggtmeslvhesiileelfavepatsitivatalglmpvilcdspslqekflkpfi
sgegeplaslmhsepngtanwlqkggpglqttarkvgnewvisgeklwpsnsggwdykga
dlacvvcrvsddpskpqdpnvdpatqiavllvtretiannkkdayqilgepelaghitts
gphtrftefhvphenllctpglkaqglvetafamsaalvgamaigtaraafeealvfaks
dtrggskhiiehqsvadklidckirletsrllvwkavttledealewkvklemamqtkiy
ttdvavecvidamkavgmksyakdmsfprllnevmcyplfnggniglrrrqmqrvmaled
yepwaatygss

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3d9eC (C:)
vdfklspsqlearrhaqafantvltkasaeystqkdqlsrfqatrpfyreavrhglikaq
vpiplggtmeslvhesiileelfavepatsitivatalglmpvilcdspslqekflkpfi
sgegeplaslmhsepngtanwlqkggpglqttarkvgnewvisgeklwpsnsggwdykga
dlacvvcrvsddpskpqdpnvdpatqiavllvtretiannkkdayqilgepelaghitts
gphtrftefhvphenllctpglkaqglvetafamsaalvgamaigtaraafeealvfaks
dtrggskhiiehqsvadklidckirletsrllvwkavttledealewkvklemamqtkiy
ttdvavecvidamkavgmksyakdmsfprllnevmcyplfnggniglrrrqmqrvmaled
yepwaatygsskvdksrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3d9eC (C:)
vdfklspsqlearrhaqafantvltkasaeystqkdqlsrfqatrpfyreavrhglikaq
vpiplggtmeslvhesiileelfavepatsitivatalglmpvilcdspslqekflkpfi
sgegeplaslmhsepngtanwlqkggpglqttarkvgnewvisgeklwpsnsggwdykga
dlacvvcrvsddpskpqdpnvdpatqiavllvtretiannkkdayqilgepelaghitts
gphtrftefhvphenllctpglkaqglvetafamsaalvgamaigtaraafeealvfaks
dtrggskhiiehqsvadklidckirletsrllvwkavttledealewkvklemamqtkiy
ttdvavecvidamkavgmksyakdmsfprllnevmcyplfnggniglrrrqmqrvmaled
yepwaatygs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3d9eD (D:)
vdfklspsqlearrhaqafantvltkasaeystqkdqlsrfqatrpfyreavrhglikaq
vpiplggtmeslvhesiileelfavepatsitivatalglmpvilcdspslqekflkpfi
sgegeplaslmhsepngtanwlqkggpglqttarkvgnewvisgeklwpsnsggwdykga
dlacvvcrvsddpskpqdpnvdpatqiavllvtretiannkkdayqilgepelaghitts
gphtrftefhvphenllctpglkaqglvetafamsaalvgamaigtaraafeealvfaks
dtrggskhiiehqsvadklidckirletsrllvwkavttledealewkvklemamqtkiy
ttdvavecvidamkavgmksyakdmsfprllnevmcyplfnggniglrrrqmqrvmaled
yepwaatygsskvdksrl

    Sequence, based on observed residues (ATOM records): (download) 
    >3d9eD (D:)
vdfklspsqlearrhaqafantvltkasaeystqkdqlsrfqatrpfyreavrhglikaq
vpiplggtmeslvhesiileelfavepatsitivatalglmpvilcdspslqekflkpfi
sgegeplaslmhsepngtanwlqkggpglqttarkvgnewvisgeklwpsnsggwdykga
dlacvvcrvsddpskpqdpnvdpatqiavllvtretiannkkdayqilgepelaghitts
gphtrftefhvphenllctpglkaqglvetafamsaalvgamaigtaraafeealvfaks
dtrggskhiiehqsvadklidckirletsrllvwkavttledealewkvklemamqtkiy
ttdvavecvidamkavgmksyakdmsfprllnevmcyplfnggniglrrrqmqrvmaled
yepwaatygss