PDB entry 3d2l

View 3d2l on RCSB PDB site
Description: Crystal structure of SAM-dependent methyltransferase (ZP_00538691.1) from EXIGUOBACTERIUM SP. 255-15 at 1.90 A resolution
Class: transferase
Keywords: ZP_00538691.1, SAM-dependent methyltransferase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Methyltransferase domain, TRANSFERASE
Deposited on 2008-05-08, released 2008-05-20
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.189
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SAM-dependent methyltransferase
    Species: Exiguobacterium sibiricum 255-15 [TaxId:262543]
    Gene: ZP_00538691.1, ExigDRAFT_1659
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3d2la_
  • Chain 'B':
    Compound: SAM-dependent methyltransferase
    Species: Exiguobacterium sibiricum 255-15 [TaxId:262543]
    Gene: ZP_00538691.1, ExigDRAFT_1659
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3d2lb_
  • Chain 'C':
    Compound: SAM-dependent methyltransferase
    Species: Exiguobacterium sibiricum 255-15 [TaxId:262543]
    Gene: ZP_00538691.1, ExigDRAFT_1659
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3d2lc_
  • Chain 'D':
    Compound: SAM-dependent methyltransferase
    Species: Exiguobacterium sibiricum 255-15 [TaxId:262543]
    Gene: ZP_00538691.1, ExigDRAFT_1659
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3d2ld_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d2lA (A:)
gmayeqfayvydelmqdvpypewvawvleqvepgkriadigcgtgtatllladhyevtgv
dlseemleiaqekametnrhvdfwvqdmrelelpepvdaitilcdslnylqteadvkqtf
dsaarlltdggkllfdvhspykmetlfngktyathaeqssyiwfadpgeeplsvvheltf
fiegedgrydrvdethhqrtyppeqyitwlreagfrvcavtgdfksdaptetaeriffva
eki

    Sequence, based on observed residues (ATOM records): (download) 
    >3d2lA (A:)
qfayvydelmqdvpypewvawvleqvepgkriadigcgtgtatllladhyevtgvdlsee
mleiaqekametnrhvdfwvqdmrelelpepvdaitilcdslnylqteadvkqtfdsaar
lltdggkllfdvhspykmetlfngktyathaeqssyiwfadpgeeplsvvheltffiege
dgrydrvdethhqrtyppeqyitwlreagfrvcavtgdfksdaptetaeriffvaeki

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d2lB (B:)
gmayeqfayvydelmqdvpypewvawvleqvepgkriadigcgtgtatllladhyevtgv
dlseemleiaqekametnrhvdfwvqdmrelelpepvdaitilcdslnylqteadvkqtf
dsaarlltdggkllfdvhspykmetlfngktyathaeqssyiwfadpgeeplsvvheltf
fiegedgrydrvdethhqrtyppeqyitwlreagfrvcavtgdfksdaptetaeriffva
eki

    Sequence, based on observed residues (ATOM records): (download) 
    >3d2lB (B:)
qfayvydelmqdvpypewvawvleqvepgkriadigcgtgtatllladhyevtgvdlsee
mleiaqekametnrhvdfwvqdmrelelpepvdaitilcdslnylqteadvkqtfdsaar
lltdggkllfdvhspykmetlfngktyathaeqssyiwfadpgeeplsvvheltffiege
dgrydrvdethhqrtyppeqyitwlreagfrvcavtgdfksdaptetaeriffvaeki

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3d2lC (C:)
gmayeqfayvydelmqdvpypewvawvleqvepgkriadigcgtgtatllladhyevtgv
dlseemleiaqekametnrhvdfwvqdmrelelpepvdaitilcdslnylqteadvkqtf
dsaarlltdggkllfdvhspykmetlfngktyathaeqssyiwfadpgeeplsvvheltf
fiegedgrydrvdethhqrtyppeqyitwlreagfrvcavtgdfksdaptetaeriffva
eki

    Sequence, based on observed residues (ATOM records): (download) 
    >3d2lC (C:)
mayeqfayvydelmqdvpypewvawvleqvepgkriadigcgtgtatllladhyevtgvd
lseemleiaqekametnrhvdfwvqdmrelelpepvdaitilcdslnylqteadvkqtfd
saarlltdggkllfdvhspykmetlfngktyathaeqssyiwfadpgeeplsvvheltff
iegedgrydrvdethhqrtyppeqyitwlreagfrvcavtgdfksdaptetaeriffvae
ki

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3d2lD (D:)
gmayeqfayvydelmqdvpypewvawvleqvepgkriadigcgtgtatllladhyevtgv
dlseemleiaqekametnrhvdfwvqdmrelelpepvdaitilcdslnylqteadvkqtf
dsaarlltdggkllfdvhspykmetlfngktyathaeqssyiwfadpgeeplsvvheltf
fiegedgrydrvdethhqrtyppeqyitwlreagfrvcavtgdfksdaptetaeriffva
eki

    Sequence, based on observed residues (ATOM records): (download) 
    >3d2lD (D:)
qfayvydelmqdvpypewvawvleqvepgkriadigcgtgtatllladhyevtgvdlsee
mleiaqekametnrhvdfwvqdmrelelpepvdaitilcdslnylqteadvkqtfdsaar
lltdggkllfdvhspykmetlfngktyathaeqssyiwfadpgeeplsvvheltffiege
dgrydrvdethhqrtyppeqyitwlreagfrvcavtgdfksdaptetaeriffvaeki