PDB entry 3ck5

View 3ck5 on RCSB PDB site
Description: Crystal structure of a racemase from Streptomyces coelicolor A3(2) with bound magnesium
Class: isomerase
Keywords: RACEMASE, Magnesium, STREPTOMYCES COELICOLOR A3(2), 9301A, STRUCTURAL GENOMICS, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, ISOMERASE
Deposited on 2008-03-14, released 2008-03-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative racemase
    Species: Streptomyces coelicolor [TaxId:100226]
    Gene: SCO3480, SCE65.16c
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RKF7 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3ck5a1, d3ck5a2, d3ck5a3
  • Chain 'B':
    Compound: Putative racemase
    Species: Streptomyces coelicolor [TaxId:100226]
    Gene: SCO3480, SCE65.16c
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RKF7 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3ck5b1, d3ck5b2, d3ck5b3
  • Chain 'C':
    Compound: Putative racemase
    Species: Streptomyces coelicolor [TaxId:100226]
    Gene: SCO3480, SCE65.16c
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RKF7 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3ck5c1, d3ck5c2, d3ck5c3
  • Chain 'D':
    Compound: Putative racemase
    Species: Streptomyces coelicolor [TaxId:100226]
    Gene: SCO3480, SCE65.16c
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RKF7 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3ck5d1, d3ck5d2, d3ck5d3
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ck5A (A:)
msliervrtdlyriplptrltdsthgammdfelitvriedsdgatglgytytvnhggaav
atmvdkdlrgcllgadaeqiekiwqsmwwrlhyagrgghatsaisavdialwdlkgirar
tplwklfggydpvvpvyaggidlelpvadlktqadrflaggfraikmkvgrpdlkedvdr
vsalrehlgdsfplmvdanmkwtvdgairaaralapfdlhwieeptipddlvgnarivre
sghtiaggenlhtlydfhnavragsltlpepdvsniggyttfrkvaalaeannmlltshg
vhdltvhalasvphrtymeahgfglhaymaepmavtdgcvsapdrpghgvvldferlgrl
avgeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ck5A (A:)
liervrtdlyriplptrltdsthgammdfelitvriedsdgatglgytytvnhggaavat
mvdkdlrgcllgadaeqiekiwqsmwwrlhyagrgghatsaisavdialwdlkgirartp
lwklfggydpvvpvyaggidlelpvadlktqadrflaggfraikmkvgrpdlkedvdrvs
alrehlgdsfplmvdanmkwtvdgairaaralapfdlhwieeptipddlvgnarivresg
htiaggenlhtlydfhnavragsltlpepdvsniggyttfrkvaalaeannmlltshgvh
dltvhalasvphrtymeahlhaymaepmavtdgcvsapdrpghgvvldferlgrlav

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ck5B (B:)
msliervrtdlyriplptrltdsthgammdfelitvriedsdgatglgytytvnhggaav
atmvdkdlrgcllgadaeqiekiwqsmwwrlhyagrgghatsaisavdialwdlkgirar
tplwklfggydpvvpvyaggidlelpvadlktqadrflaggfraikmkvgrpdlkedvdr
vsalrehlgdsfplmvdanmkwtvdgairaaralapfdlhwieeptipddlvgnarivre
sghtiaggenlhtlydfhnavragsltlpepdvsniggyttfrkvaalaeannmlltshg
vhdltvhalasvphrtymeahgfglhaymaepmavtdgcvsapdrpghgvvldferlgrl
avgeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ck5B (B:)
liervrtdlyriplptrltdsthgammdfelitvriedsdgatglgytytvnhggaavat
mvdkdlrgcllgadaeqiekiwqsmwwrlhyagrgghatsaisavdialwdlkgirartp
lwklfggydpvvpvyaggidlelpvadlktqadrflaggfraikmkvgrpdlkedvdrvs
alrehlgdsfplmvdanmkwtvdgairaaralapfdlhwieeptipddlvgnarivresg
htiaggenlhtlydfhnavragsltlpepdvsniggyttfrkvaalaeannmlltshgvh
dltvhalasvphrtymeahlhaymaepmavtdgcvsapdrpghgvvldferlgrlav

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ck5C (C:)
msliervrtdlyriplptrltdsthgammdfelitvriedsdgatglgytytvnhggaav
atmvdkdlrgcllgadaeqiekiwqsmwwrlhyagrgghatsaisavdialwdlkgirar
tplwklfggydpvvpvyaggidlelpvadlktqadrflaggfraikmkvgrpdlkedvdr
vsalrehlgdsfplmvdanmkwtvdgairaaralapfdlhwieeptipddlvgnarivre
sghtiaggenlhtlydfhnavragsltlpepdvsniggyttfrkvaalaeannmlltshg
vhdltvhalasvphrtymeahgfglhaymaepmavtdgcvsapdrpghgvvldferlgrl
avgeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ck5C (C:)
liervrtdlyriplptrltdsthgammdfelitvriedsdgatglgytytvnhggaavat
mvdkdlrgcllgadaeqiekiwqsmwwrlhyagrgghatsaisavdialwdlkgirartp
lwklfggydpvvpvyaggidlelpvadlktqadrflaggfraikmkvgrpdlkedvdrvs
alrehlgdsfplmvdanmkwtvdgairaaralapfdlhwieeptipddlvgnarivresg
htiaggenlhtlydfhnavragsltlpepdvsniggyttfrkvaalaeannmlltshgvh
dltvhalasvphrtymeahlhaymaepmavtdgcvsapdrpghgvvldferlgrlav

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ck5D (D:)
msliervrtdlyriplptrltdsthgammdfelitvriedsdgatglgytytvnhggaav
atmvdkdlrgcllgadaeqiekiwqsmwwrlhyagrgghatsaisavdialwdlkgirar
tplwklfggydpvvpvyaggidlelpvadlktqadrflaggfraikmkvgrpdlkedvdr
vsalrehlgdsfplmvdanmkwtvdgairaaralapfdlhwieeptipddlvgnarivre
sghtiaggenlhtlydfhnavragsltlpepdvsniggyttfrkvaalaeannmlltshg
vhdltvhalasvphrtymeahgfglhaymaepmavtdgcvsapdrpghgvvldferlgrl
avgeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ck5D (D:)
liervrtdlyripldfelitvriedsdgatglgytytvnhggaavatmvdkdlrgcllga
daeqiekiwqsmwwrlhyagrgghatsaisavdialwdlkgirartplwklfggydpvvp
vyaggidlelpvadlktqadrflaggfraikmkvgrpdlkedvdrvsalrehlgdsfplm
vdanmkwtvdgairaaralapfdlhwieeptipddlvgnarivresghtiaggenlhtly
dfhnavragsltlpepdvsniggyttfrkvaalaeannmlltshgvhdltvhalasvphr
tymeahmavtdgcvsapdrpghgvvldferlgrl