PDB entry 3cc2

View 3cc2 on RCSB PDB site
Description: The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Class: ribosome
Keywords: genomic sequnece for r-proteins, Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding, Metal-binding, Zinc-finger, RIBOSOME
Deposited on 2008-02-23, released 2008-05-20
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.199
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: 23S ribosomal RNA
    Species: Haloarcula marismortui
  • Chain '1':
    Compound: 50S ribosomal protein L37e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc211
  • Chain '2':
    Compound: 50S ribosomal protein L39e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc221
  • Chain '3':
    Compound: 50S ribosomal protein L44E
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc231
  • Chain '9':
    Compound: 5S ribosomal RNA
    Species: Haloarcula marismortui
  • Chain 'A':
    Compound: 50S ribosomal protein L2P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 50S ribosomal protein L3P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2b1
  • Chain 'C':
    Compound: 50S ribosomal protein L4P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2c1
  • Chain 'D':
    Compound: 50S ribosomal protein L5P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2d1
  • Chain 'E':
    Compound: 50S ribosomal protein L6P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L7Ae
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2f1
  • Chain 'G':
    Compound: 50S ribosomal protein L10e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2g1
  • Chain 'H':
    Compound: 50S ribosomal protein L10e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2h1
  • Chain 'I':
    Compound: 50S ribosomal protein L11P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2i1
  • Chain 'J':
    Compound: 50S ribosomal protein L13P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2j1
  • Chain 'K':
    Compound: 50S ribosomal protein L14P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2k1
  • Chain 'L':
    Compound: 50S ribosomal protein L15P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2l1
  • Chain 'M':
    Compound: 50S ribosomal protein L15e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2m1
  • Chain 'N':
    Compound: 50S ribosomal protein L18P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2n1
  • Chain 'O':
    Compound: 50S ribosomal protein L18e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2o1
  • Chain 'P':
    Compound: 50S ribosomal protein L19e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2p1
  • Chain 'Q':
    Compound: 50S ribosomal protein L21e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2q1
  • Chain 'R':
    Compound: 50S ribosomal protein L22P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2r1
  • Chain 'S':
    Compound: 50S ribosomal protein L23P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2s1
  • Chain 'T':
    Compound: 50S ribosomal protein L24P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2t1
  • Chain 'U':
    Compound: 50S ribosomal protein L24e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2u1
  • Chain 'V':
    Compound: 50S ribosomal protein L29P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2v1
  • Chain 'W':
    Compound: 50S ribosomal protein L30P
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2w1
  • Chain 'X':
    Compound: 50S ribosomal protein L31e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2x1
  • Chain 'Y':
    Compound: 50S ribosomal protein L32e
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3cc2y1
  • Chain 'Z':
    Compound: 50S ribosomal protein L37Ae
    Species: Haloarcula marismortui
    Database cross-references and differences (RAF-indexed):
    • PDB 3CC2
    Domains in SCOPe 2.01: d3cc2z1
  • Heterogens: MG, K, NA, CL, CD, HOH

PDB Chain Sequences:

  • Chain '0':
    No sequence available.

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >3cc21 (1:)
mtgagtpsqgkknttthtkcrrcgeksyhtkkkvcsscgfgksakrrdyewqskage

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc21 (1:)
tgagtpsqgkknttthtkcrrcgeksyhtkkkvcsscgfgksakrrdyewqskage

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >3cc22 (2:)
mgkkskatkkrlakldnqnsrvpawvmlktdrevqrnhkrrhwrrndtde

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc22 (2:)
gkkskatkkrlakldnqnsrvpawvmlktdrrnhkrrhwrrndtde

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3cc23 (3:)
mqmprrfntycphcnehqehevekvrsgrqtgmkwidrqrernsgigndgkfskvpggdk
ptkktdlkyrcgecgkahlregwragrlefqe

  • Chain '9':
    No sequence available.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3cc2B (B:)
mpqpsrprkgslgfgprkrstsetprfnswpsddgqpgvqgfagykagmthvvlvndepn
spregmeetvpvtvietppmravalrayedtpygqrpltevwtdefhseldrtldvpedh
dpdaaeeqirdaheagdlgdlrlithtvpdavpsvpkkkpdvmetrvgggsvsdrldhal
divedggehamndifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwrrrignl
gpwnpsrvrstvpqqgqtgyhqrtelnkrlidigegdeptvdggfvnygevdgpytlvkg
svpgpdkrlvrfrpavrpndqprldpevryvsnesnqg

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2B (B:)
pqpsrprkgslgfgprkrstsetprfnswpsddgqpgvqgfagykagmthvvlvndepns
pregmeetvpvtvietppmravalrayedtpygqrpltevwtdefhseldrtldvpedhd
pdaaeeqirdaheagdlgdlrlithtvpdavpsvpkkkpdvmetrvgggsvsdrldhald
ivedggehamndifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwrrrignlg
pwnpsrvrstvpqqgqtgyhqrtelnkrlidigegdeptvdggfvnygevdgpytlvkgs
vpgpdkrlvrfrpavrpndqprldpevryvsnesnqg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3cc2C (C:)
mqatiydldgntdgevdlpdvfetpvrsdligkavraaqanrkqdygsdeyaglrtpaes
fgsgrgqahvpkqdgrarrvpqavkgrsahppktekdrsldlndkerqlavrsalaatad
adlvadrghefdrdevpvvvsddfedlvktqevvsllealdvhadidradetkikagqgs
argrkyrrpasilfvtsdepstaarnlagadvatasevntedlapggapgrltvftesal
aevaer

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3cc2D (D:)
mssesesggdfhemrepriekvvvhmgighggrdlanaedilgeitgqmpvrtkakrtvg
efdiregdpigakvtlrdemaeeflqtalplaelatsqfddtgnfsfgveehtefpsqey
dpsigiygldvtvnlvrpgyrvakrdkasrsiptkhrlnpadavafiestydvevse

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2D (D:)
fhemrepriekvvvhmgighanaedilgeitgqmpvrtkakrtvgefdiregdpigakvt
lrdemaeeflqtalplaelatsqfddtgnfsfgldvtvnlvrpgyrvakrdkasrsiptk
hrlnpadavafiestydvev

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3cc2F (F:)
mpvyvdfdvpadleddalealevardtgavkkgtnettksiergsaelvfvaedvqpeei
vmhipeladekgvpfifveqqddlghaaglevgsaaaavtdageadadvediadkveelr

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2F (F:)
pvyvdfdvpadleddalealevardtgavkkgtnettksiergsaelvfvaedvqpeeiv
mhipeladekgvpfifveqqddlghaaglevgsaaaavtdageadadvediadkveelr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3cc2G (G:)
msaeserktetipewkqeevdaivemiesyesvgvvniagipsrqlqdmrrdlhgtaelr
vsrntlleralddvddgledlngyitgqvgligtddnpfslfqeleasktpapigageva
pndivipegdtgvdpgpfvgelqsvgadariqegsiqvlsdstvldtgeevsqelsnvln
elgiepkevgldlravfadgvlfepeeleldideyrsdiqaaagrafnlsvnadyptatt
aptmlqsargnakslalqaaiedpevvpdlvskadaqvralasqiddeealpeelqgvea
dvateeptddqdddtaseddadaddaaeeadddddddedagdalgamf

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2G (G:)
ipewkqeevdaivemiesrntlleraldd

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3cc2H (H:)
msdkpasmyrdidkpaytrreyitgipgskiaqhkmgrkqkdaddypvqisliveetvql
rhgsleasrlsanrhlikelgeegdykmtlrkfphqvlrenkqatgagadrvsdgmraaf
gkivgtaarvqageqlftaycnvedaehvkeafrraynkitpscrikvergeellia

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2H (H:)
kpasmyrdidkpaytrreyitgipgskiaqhkmgrkqkdaddypvqisliveetvqlrhg
sleasrlsanrhlikelgeegdykmtlrkfphqvlrenkdgmraafgkivgtaarvqage
qlftaycnvedaehvkeafrraynkitpscrikvergeel

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3cc2I (I:)
magtievlvpggeanpgpplgpelgptpvdvqavvqeindqtaafdgtevpvtvkydddg
sfeievgvpptaelikdeagfetgsgepqedfvadlsvdqvkqiaeqkhpdllsydltna
akevvgtctslgvtiegenprefkeridageyddvfaaeaqa

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2I (I:)
gvpptaelikdeagfetgsgepqedfvadlsvdqvkqiaeqkhpdllsydltnaakevvg
tctslgvtie

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3cc2J (J:)
msvaefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekr
vdigndngyfypkrpdgifkrtirgmlphkkqrgreafesvrvylgnpydedgevldgts
ldrlsnikfvtlgeisetlganktw

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2J (J:)
aefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekrvdi
gndngyfypkrpdgifkrtirgmlphkkqrgreafesvrvylgnpydedgevldgtsldr
lsnikfvtlgeisetlganktw

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3cc2K (K:)
mealgadvtqglekgslitcadntgarelkvisvhgysgtknrhpkaglgdkitvsvtkg
tpemrrqvleavvvrqrkpirrpdgtrvkfednaavivdenedprgtelkgpiarevaqr
fgsvasaatmiv

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3cc2L (L:)
mtskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqe
eaatidvreidenvtllaaddvaevedggfrvdvrdvveeaddadyvkvlgagqvrhelt
liaddfsegarekvegaggsveltdlgeerqaeaeetedadadee

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2L (L:)
tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
aatidvreidenvtllaaddvaefrvdvrdvveeaddadyvkvlgagqvrheltliaddf
segarekvegaggsveltdlgeerq

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3cc2M (M:)
marsaysyirdawknpgdgqlaelqwqrqqewrnegaverierptrldkarsqgykakqg
vivarvsvrkgsarkrrhkagrrskrqgvtritrrkdiqrvaeerasrtfpnlrvlnsys
vgqdgrqkwhevilidpnhpaiqndddlswicaddqadrvfrgltgagrrnrglsgkgkg
sektrpslrsnggkgk

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2M (M:)
arsaysyirdawknpgdgqlaelqwqrqqewrnegaverierptrldkarsqgykakqgv
ivarvsvrkgsarkrrhkagrrskrqgvtritrrkdiqrvaeerasrtfpnlrvlnsysv
gqdgrqkwhevilidpnhpaiqndddlswicaddqadrvfrgltgagrrnrglsgkgkgs
ektrpslrsnggkg

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >3cc2N (N:)
matgprykvpmrrrreartdyhqrlrllksgkprlvarksnkhvraqlvtlgpngddtla
sahssdlaeygweaptgnmpsayltgllaglraqeagveeavldiglnsptpgskvfaiq
egaidagldiphnddvladwqrtrgahiaeydeqleeplysgdfdaadlpehfdelretl
ldgdiel

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2N (N:)
atgprykvpmrrrreartdyhqrlrllksgkprlvarksnkhvraqlvtlgpngddtlas
ahssdlaeygweaptgnmpsayltgllaglraqeagveeavldiglnsptpgskvfaiqe
gaidagldiphnddvladwqrtrgahiaeydeqleeplysgdfdaadlpehfdelretll
dgdiel

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >3cc2O (O:)
msktnprlssliadlksaarssggavwgdvaerlekprrthaevnlgrieryaqedetvv
vpgkvlgsgvlqkdvtvaavdfsgtaetkidqvgeavsleqaiennpegshvrvir

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2O (O:)
sktnprlssliadlksaarssggavwgdvaerlekprrthaevnlgrieryaqedetvvv
pgkvlgsgvlqkdvtvaavdfsgtaetkidqvgeavsleqaiennpegshvrvir

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >3cc2P (P:)
mtdlsaqkrlaadvldvgknrvwfnperqgdiadaitredvrelvdegaiqakdkkgnsr
grarerqkkrayghqkgagsrkgkagarqnskedwesriraqrtklrelrdegtlsssqy
rdlydkagggefdsvadleryidanhgda

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2P (P:)
tdlsaqkrlaadvldvgknrvwfnperqgdiadaitredvrelvdegaiqakdkkgnsrg
rarerqkkrayghqkgagsrkgkagarqnskedwesriraqrtklrelrdegtlsssqyr
dlydkagggefdsvadleryida

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >3cc2Q (Q:)
mpssngplegtrgklknkprdrgtsppqraveefddgekvhlkidpsvpngrfhprfdgq
tgtvegkqgdaykvdivdggkektiivtaahlrrqe

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2Q (Q:)
pssngplegtrgklknkprdrgtsppqraveefddgekvhlkidpsvpngrfhprfdgqt
gtvegkqgdaykvdivdggkektiivtaahlrrqe

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >3cc2R (R:)
mgisysveadpdttakamlrerqmsfkhskaiareikgktageavdyleaviegdqpvpf
kqhnsgvghkskvdgwdagrypekaskafldllenavgnadhqgfdgeamtikhvaahkv
geqqgrkpramgrasawnspqvdvelileepeved

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2R (R:)
gisysveadpdttakamlrerqmsfkhskaiareikgktageavdyleaviegdqpvpfk
qhnsgvghkskvdgwdagrypekaskafldllenavgnadhqgfdgeamtikhvaahkvg
eqqgrkpramgrasawnspqvdvelileep

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >3cc2S (S:)
mswdvikhphvtekamndmdfqnklqfavddraskgevadaveeqydvtveqvntqntmd
gekkavvrlsedddaqevasrigvf

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2S (S:)
swdvikhphvtekamndmdfqnklqfavddraskgevadaveeqydvtveqvntqntmdg
ekkavvrlsedddaqevasri

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >3cc2T (T:)
mskqpdkqrksqrraplherhkqvratlsadlreeygqrnvrvnagdtvevlrgdfagee
gevinvdldkavihvedvtlektdgeevprpldtsnvrvtdldledekrearleseddsa

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2T (T:)
skqpdkqrksqrraplherhkqvratlsadlreeygqrnvrvnagdtvevlrgdfageeg
evinvdldkavihvedvtlektdgeevprpldtsnvrvtdldledekrearleseddsa

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >3cc2U (U:)
mprtrecdycgtdiepgtgtmfvhkdgatthfcsskcennadlgrearnlewtdtargea
geaedea

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2U (U:)
recdycgtdiepgtgtmfvhkdgatthfcsskcennadlgrearnlewtdtar

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >3cc2V (V:)
mtvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiarikti
qgeegdlqene

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2V (V:)
tvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiariktiq
geegd

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3cc2W (W:)
mhalvqlrgevnmhtdiqdtlemlnihhvnhctlvpetdayrgmvakvndfvafgepsqe
tletvlatraeplegdadvddewvaehtdyddisglafallseettlreqglsptlrlhp
prgghdgvkhpvkeggqlgkhdtegiddlleamr

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >3cc2X (X:)
msasdfeervvtiplrdaraepnhkradkamilirehlakhfsvdedavrldpsineaaw
argrantpskirvraarfeeegeaiveaetae

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2X (X:)
ervvtiplrdaraepnhkradkamilirehlakhfsvdedavrldpsineaawargrant
pskirvraarfeeegeaiveae

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >3cc2Y (Y:)
madneedveaeeeyteltdisgvgpskaeslreagfesvedvrgadqsaladvsgignal
aarikadvggleveseteaeveeeggeeapdedvetelqargltektpdlsdedarlltq
rhrvgkpqfnrqdhhkkkrvstswrkprgqlskqrrgikgkgdtveagfrsptavrgkhp
sgfeevrvhnvddlegvdgdteavriaskvgarkrerieeeaedagirvlnptyvevevs
e

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2Y (Y:)
telqargltektpdlsdedarlltqrhrvgkpqfnrqdhhkkkrvstswrkprgqlskqr
rgikgkgdtveagfrsptavrgkhpsgfeevrvhnvddlegvdgdteavriaskvgarkr
erieeeaedagirvlnptyvev

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >3cc2Z (Z:)
msprarrepnleglmwplggqqttmasksgktgssgrfgarygrvsrrrvaeiesemned
hacpncgedrvdrqgtgiwqcsycdykftggsykpetpggktvrrsiraalsedee

    Sequence, based on observed residues (ATOM records): (download) 
    >3cc2Z (Z:)
ssgrfgarygrvsrrrvaeiesemnedhacpncgedrvdrqgtgiwqcsycdykftggsy
kpetpggktvrrs