PDB entry 3c8k

View 3c8k on RCSB PDB site
Description: The crystal structure of Ly49C bound to H-2Kb
Class: immune system
Keywords: Natural killer cell receptor; MHC; Virus; Crystal structure, Glycoprotein, Immune response, Membrane, MHC I, Transmembrane, Immunoglobulin domain, Secreted, IMMUNE SYSTEM
Deposited on 2008-02-12, released 2008-04-15
The last revision prior to the SCOP 1.75 freeze date was dated 2008-04-15, with a file datestamp of 2008-04-11.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.201
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: h-2 class I histocompatibility antigen, k-b alpha chain
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d3c8ka1, d3c8ka2
  • Chain 'B':
    Compound: beta-2 microglobulin
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d3c8kb1
  • Chain 'D':
    Compound: Natural killer cell receptor Ly-49C
    Species: MUS MUSCULUS
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q61198 (0-124)
      • engineered (33)
      • engineered (55)
      • engineered (85)
    Domains in SCOP 1.75: d3c8kd1
  • Chain 'P':
    Compound: Ovalbumin peptide
    Species: synthetic, synthetic
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 3C8K (0-7)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3c8kA (A:)
    gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
    eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
    cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
    rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
    fqkwasvvvplgkeqyytchvyhqglpepltlrw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3c8kB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3c8kD (D:)
    rgvkywfcystkcyyfimnkttwsgckancqhygvpilkiededelkflqrhvipgnywi
    glsydkkkkewawidngpskldmkikkmnfksrgcvflskariedidcnipyycicgkkl
    dkfpd
    

  • Chain 'P':
    No sequence available.