PDB entry 3c5z
View 3c5z on RCSB PDB site
Description: Crystal structure of mouse MHC class II I-Ab/3K peptide complexed with mouse TCR B3K506
Class: sugar binding protein/immune system
Keywords: TCR-pMHC complex, Glycoprotein, Immune response, Membrane, MHC II, Transmembrane, SUGAR BINDING PROTEIN-IMMUNE SYSTEM COMPLEX
Deposited on
2008-02-01, released
2008-04-29
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-08-16, with a file datestamp of
2017-08-11.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: TCR B3K506 Alpha Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c5za1, d3c5za2 - Chain 'B':
Compound: TCR B3K506 Beta Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c5zb1, d3c5zb2 - Chain 'C':
Compound: H-2 class II histocompatibility antigen, A-B alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-Aa
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c5zc1, d3c5zc2 - Chain 'D':
Compound: 3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain)
Species: Mus musculus [TaxId:10090]
Gene: H2-Ab1, H2-iabeta
Database cross-references and differences (RAF-indexed):
- Uniprot P14483 (Start-216)
- linker (13)
- engineered (215)
- PDB 3C5Z (0-12)
Domains in SCOPe 2.08: d3c5zd1, d3c5zd2 - Chain 'E':
Compound: TCR B3K506 Alpha Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c5ze1, d3c5ze2 - Chain 'F':
Compound: TCR B3K506 Beta Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c5zf1, d3c5zf2 - Chain 'G':
Compound: H-2 class II histocompatibility antigen, A-B alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-Aa
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c5zg1, d3c5zg2 - Chain 'H':
Compound: 3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain)
Species: Mus musculus [TaxId:10090]
Gene: H2-Ab1, H2-iabeta
Database cross-references and differences (RAF-indexed):
- Uniprot P14483 (Start-216)
- linker (13)
- engineered (215)
- PDB 3C5Z (0-12)
Domains in SCOPe 2.08: d3c5zh1, d3c5zh2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3c5zA (A:)
dsvtqtegnvalseedfltihcnysasgypalfwyvqypgegpqflfrasrdkekgssrg
featydkgttsfhlrkasvqesdsavyycalvisntnkvvfgtgtrlqvlpniqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnks
dfacanafnnsiipedtffpsp
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3c5zB (B:)
avtqsprskvavtggkvtlschqtnnhdymywyrqdtghglrlihysyvadstekgdipd
gykasrpsqenfslilelaslsqtavyfcasidssgntlyfgegsrlivvedlknvfppe
vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3c5zC (C:)
ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
pe
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3c5zD (D:)
feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
tfqvlvmlemtprrgevytchvehpslkspitvewka
Sequence, based on observed residues (ATOM records): (download)
>3c5zD (D:)
feaqkakankavdgerhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehra
vtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrrleqpnvvislsrtea
lnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdwtfqvlvmlemtprrg
evytchvehpslkspitvewka
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3c5zE (E:)
dsvtqtegnvalseedfltihcnysasgypalfwyvqypgegpqflfrasrdkekgssrg
featydkgttsfhlrkasvqesdsavyycalvisntnkvvfgtgtrlqvlpniqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnks
dfacanafnnsiipedtffpsp
Sequence, based on observed residues (ATOM records): (download)
>3c5zE (E:)
dsvtqtegnvalseedfltihcnysasgypalfwyvqypgegpqflfrasrdkekgssrg
featydkgttsfhlrkasvqesdsavyycalvisntnkvvfgtgtrlqvlpniqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnks
dfacanafnnsiipedtffps
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>3c5zF (F:)
avtqsprskvavtggkvtlschqtnnhdymywyrqdtghglrlihysyvadstekgdipd
gykasrpsqenfslilelaslsqtavyfcasidssgntlyfgegsrlivvedlknvfppe
vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>3c5zG (G:)
ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
pe
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3c5zH (H:)
feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
tfqvlvmlemtprrgevytchvehpslkspitvewka
Sequence, based on observed residues (ATOM records): (download)
>3c5zH (H:)
feaqkakankavdgerhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehra
vtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrrleqpnvvislsrtea
lnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdwtfqvlvmlemtprrg
evytchvehpslkspitvewka