PDB entry 3c5j

View 3c5j on RCSB PDB site
Description: Crystal structure of HLA DR52c
Class: membrane protein
Keywords: HLA, MHC class II, Glycoprotein, Immune response, Membrane, MHC II, Transmembrane, Elongation factor, GTP-binding, Methylation, Nucleotide-binding, Nucleus, Phosphoprotein, Protein biosynthesis, MEMBRANE PROTEIN
Deposited on 2008-01-31, released 2008-08-05
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.202
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class II histocompatibility antigen, dr alpha chain
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRA, HLA-DRA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3c5ja1, d3c5ja2
  • Chain 'B':
    Compound: MHC class II antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRB3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3c5jb1, d3c5jb2
  • Chain 'C':
    Compound: Elongation factor 1-alpha 2
    Species: Homo sapiens [TaxId:9606]
    Gene: EEF1A2, EEF1AL, STN
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3c5jA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d

    Sequence, based on observed residues (ATOM records): (download) 
    >3c5jA (A:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3c5jB (B:)
gdtrprflellksechffngtervrfleryfhnqeefvrfdsdvgeyravtelgrpvaes
wnsqkdlleqkrgqvdnycrhnygvvesftvqrrvhpqvtvypaktqplqhhnllvcsvs
gfypgsievrwfrngqeektgvvstglihngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra

    Sequence, based on observed residues (ATOM records): (download) 
    >3c5jB (B:)
rprflellksechffngtervrfleryfhnqeefvrfdsdvgeyravtelgrpvaeswns
qkdlleqkrgqvdnycrhnygvvesftvqrrvhpqvtvypakhhnllvcsvsgfypgsie
vrwfrngqeektgvvstglihngdwtfqtlvmletvprsgevytcqvehpsvtspltvew
ra

  • Chain 'C':
    No sequence available.