PDB entry 3bkm
View 3bkm on RCSB PDB site
Description: Structure of anti-amyloid-beta Fab WO2 (Form A, P212121)
Class: immune system
Keywords: Abeta, amyloid beta peptide, Fab, WO2, alzheimer's disease, immunotherapies, APP, IMMUNE SYSTEM
Deposited on
2007-12-07, released
2008-04-15
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.205
AEROSPACI score: 0.57
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: WO2 IgG2a Fab fragment Heavy Chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3bkmh_ - Chain 'L':
Compound: WO2 IgG2a Fab fragment Light Chain Kappa
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3bkml1, d3bkml2 - Heterogens: NA, ZN, HOH
PDB Chain Sequences:
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>3bkmH (H:)
vtlkesgpgllkpsqtlsltcsfsgfsirtskvgvswirqpsgkglewlahiywdddkry
npslesrltiskdtsrdmvfmkitsvdtadtatyycarrgfygrkyevnhfdywgqgttl
tvssakttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpav
lqsdlytlsssvtvtsstwpsesitcnvahpasstkvdkkivpr
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3bkmL (L:)
dqspqavssgcllkmklpvrllvlmfwipgsssdvlmtqtplslpvnlgeqasiscrssq
sivhsnghtylewylqrpgqspklliyqvstrfsgvpdrfsgsgsgtdftlrisrveaed
lgvyycfqaslvpltfgagtklelkradaaptvsifppsseqltsggasvvcflnnfypk
dinvkwkidgserqngvlnswtdqdskdstysmsstltltkdeyerhnsytceathktst
spivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>3bkmL (L:)
dvlmtqtplslpvnlgeqasiscrssqsivhsnghtylewylqrpgqspklliyqvstrf
sgvpdrfsgsgsgtdftlrisrveaedlgvyycfqaslvpltfgagtklelkradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne