PDB entry 3bgf
View 3bgf on RCSB PDB site
Description: X-ray crystal structure of the SARS coronavirus spike receptor binding domain in complex with F26G19 Fab
Class: Viral Protein/Immune System
Keywords: antigen-antibody complex, Envelope protein, Glycoprotein, Host-virus interaction, Membrane, Transmembrane, Virion, Virulence, Viral Protein/Immune System COMPLEX
Deposited on
2007-11-26, released
2008-12-02
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-05-19, with a file datestamp of
2009-05-15.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.237
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Spike protein S1
Species: SARS coronavirus [TaxId:227859]
Gene: S
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3bgfa_ - Chain 'B':
Compound: F26G19 Fab
Species: Mus musculus [TaxId:10090]
- Chain 'C':
Compound: F26G19 Fab
Species: Mus musculus [TaxId:10090]
Domains in SCOPe 2.06: d3bgfc1, d3bgfc2 - Chain 'H':
Compound: F26G19 Fab
Species: Mus musculus [TaxId:10090]
- Chain 'L':
Compound: F26G19 Fab
Species: Mus musculus [TaxId:10090]
Domains in SCOPe 2.06: d3bgfl1, d3bgfl2 - Chain 'S':
Compound: Spike protein S1
Species: SARS coronavirus [TaxId:227859]
Gene: S
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3bgfs_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3bgfA (A:)
nitnlcpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndl
cfsnvyadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnyn
ykyrylrhgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvv
vlsfellnapatv
Sequence, based on observed residues (ATOM records): (download)
>3bgfA (A:)
cpfgevfnatkfpsvyawerkkisncvadysvlstffstfkcygvsatklndlcfsnvya
dsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynykyrylr
hgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvvvlsfe
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3bgfC (C:)
dilmtqspsslsaslgervsltcrasqeisgylswlqekpdgtikrliyaastldsgvpk
rfsgsrsgsdysltisslesedfadyyclqyvsypwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrn
Sequence, based on observed residues (ATOM records): (download)
>3bgfC (C:)
dilmtqspsslsaslgervsltcrasqeisgylswlqekpdgtikrliyaastldsgvpk
rfsgsrsgsdysltisslesedfadyyclqyvsypwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyehnsytceathktstspivksfnr
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>3bgfL (L:)
dilmtqspsslsaslgervsltcrasqeisgylswlqekpdgtikrliyaastldsgvpk
rfsgsrsgsdysltisslesedfadyyclqyvsypwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrn
- Chain 'S':
Sequence, based on SEQRES records: (download)
>3bgfS (S:)
nitnlcpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndl
cfsnvyadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnyn
ykyrylrhgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvv
vlsfellnapatv
Sequence, based on observed residues (ATOM records): (download)
>3bgfS (S:)
cpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndlcfsnv
yadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynykyry
lrhgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvvvlsf